Browse Element(s) Details


Os.16612.1.S1_at

Description gb:AK100307.1
DB_XREF= gi:32985516
TID=Os.16612.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078G11, full insert sequence.
FL= gb:AK100307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g166708/11PP-loop family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010098biological_processsuspensor development
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16612.1.S1_at--873--6791Chr02:9531573..9531597 (25 bp)
GTTATATGCCAGAACAGGCCCGATT
LOC_Os02g16670
Os.16612.1.S1_at--583--451Chr02:9531612..9531636 (25 bp)
ATCTCAACACCTGTCGTTGGACATC
LOC_Os02g16670
Os.16612.1.S1_at--824--8331Chr02:9531648..9531672 (25 bp)
GGCTGAAATCTCGTAGCTTCGCTTT
LOC_Os02g16670
Os.16612.1.S1_at--786--10631Chr02:9531665..9531689 (25 bp)
TTCGCTTTGCAGTGCCAACCAGGTG
LOC_Os02g16670
Os.16612.1.S1_at--1137--4371Chr02:9531679..9531703 (25 bp)
CCAACCAGGTGTCGCTGAGGCAATA
LOC_Os02g16670
Os.16612.1.S1_at--154--291Chr02:9531701..9531725 (25 bp)
ATAGCAACTTTTGGCACTAGGCAAG
LOC_Os02g16670
Os.16612.1.S1_at--708--5311Chr02:9531733..9531757 (25 bp)
GAAGGTACCACTAGATCACTGTGAG
LOC_Os02g16670
Os.16612.1.S1_at--703--3891NONE
CTGTGAGGGCAATTTTGTCAGCGCT
NONE
Os.16612.1.S1_at--947--10251Chr02:9531764..9531788 (25 bp)
TTTGTCAGCGCTGGAGGTGGCTCAA
LOC_Os02g16670
Os.16612.1.S1_at--879--10211Chr02:9531956..9531980 (25 bp)
TATTCGTCAGACATTCTTACTAGAA
NONE
Os.16612.1.S1_at--356--5191Chr02:9531983..9532007 (25 bp)
GCAATGCTTAACTCTACTTACGAAT
NONE
Target Sequence 
GTTATATGCCAGAACAGGCCCGATTNTGCACTGGTTTCCATCTCAACACCTGTCGTTGGACATCAGGGTGATCATGGCTG
AAATCTCGTAGCTTCGCTTTGCAGTGCCAACCAGGTGTCGCTGAGGCAATAGCAACTTTTGGCACTAGGCAAGTGGAAAT
GAAGGTACCACTAGATCACTGTGAGGGCAATTTTGTCAGCGCTGGAGGTGGCTCAAGTGCCTAATCGTTAAGAATTTTAA
ATAGGAGGATAGATAAATATATCAAGTACCTGAGCGCTGGAGGTGGCTCAAGTGAGATTTACCTCCCCAAGAATGCATCG
CCTAGCAGACTTCCGGTTGGACATCAGCCTGTAATTTGAAGCCAAGAATCGTTTCATGTGAATTATTCGTCAGACATTCT
TACTAGAAAAGCAATGCTTAACTCTACTTACGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis