Browse Element(s) Details


Os.16966.1.S1_s_at

Description gb:AK067025.1
DB_XREF= gi:32977043
TID=Os.16966.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093A06, full insert sequence.
FL= gb:AK067025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1385011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13820OsAffx.18834.1.S1_x_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13820OsAffx.18834.1.S1_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16966.1.S1_s_at--358--5271Chr11:7636126..7636150 (25 bp)
GAATGGTATCCCAACAACCCTGTTT
LOC_Os11g13850
Os.16966.1.S1_s_at--231--7591Chr11:7636098..7636122 (25 bp)
GGGCTCTTACACCTGCATTGAGAAA
LOC_Os11g13850
Os.16966.1.S1_s_at--1096--5511Chr11:7636077..7636101 (25 bp)
GAAAACTATTCGTGTACCCTGTGAA
LOC_Os11g13850
Os.16966.1.S1_s_at--959--4251Chr11:7636005..7636029 (25 bp)
CCGGTGGATCCGCAGAGATTATATT
LOC_Os11g13850
Os.16966.1.S1_s_at--143--5131Chr11:7635970..7635994 (25 bp)
GCACAACCTGGATTTACTGCATCCG
LOC_Os11g13850
Os.16966.1.S1_s_at--443--6251Chr11:7635679..7635703 (25 bp)
GATGTCGGAGGTTTTGGTTTCACTA
LOC_Os11g13850
Os.16966.1.S1_s_at--853--4871Chr11:7635625..7635649 (25 bp)
GCTATAATTGGCTTTCTCTTGTTAA
LOC_Os11g13850
Os.16966.1.S1_s_at--915--10491Chr11:7635586..7635610 (25 bp)
TTAACTGGGAAAGGCCTTCTCAAGG
LOC_Os11g13850
Os.16966.1.S1_s_at--746--7631Chr11:7635562..7635586 (25 bp)
GGGACTGGTTTATTGGACTTCATAT
LOC_Os11g13850
Os.16966.1.S1_s_at--1027--2891Chr11:7635510..7635534 (25 bp)
AAGGATGCTTCTTCTTTGGTGTAGA
LOC_Os11g13850
Os.16966.1.S1_s_at--1027--5271Chr11:7635487..7635511 (25 bp)
GAATGTTGTCCATGTACATCACTCA
LOC_Os11g13850
Target Sequence 
GAATGGTATCCCAACAACCCTGTTTTAAGGGCTCTTACACCTGCATTGAGAAAACTATTCGTGTACCCTGTGAAAATCGA
TGGGGAGAATATATACATCAGTATCAAGGGGGCTGTTACCTCCGGTGGATCCGCAGAGATTATATTCAGTGGGAAAGCAC
AACCTGGATTTACTGCATCCGATGTCAATATCGAAGAGGTGAGAATGGTGATTGATGAGGATGTCGGAGGTTTTGGTTTC
ACTAATAAGAATGAACTAATTAATGGGAAAGCCGCTATAATTGGCTTTCTCTTGTTAATAGACTTTGAACTTTTAACTGG
GAAAGGCCTTCTCAAGGGGACTGGTTTATTGGACTTCATATATGCNATCTCANAGAGCTTTCAGCTCATAAGGATGCTTC
TTCTTTGGTGTAGAATGTTGTCCATGTACATCACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16966.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis