Browse Element(s) Details


Os.17215.1.S1_at

Description gb:AK065684.1
DB_XREF= gi:32975702
TID=Os.17215.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042G07, full insert sequence.
FL= gb:AK065684.1 gb:AK101699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0812011/11Calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17215.1.S1_at--1116--3311Chr02:4296550..4296574 (25 bp)
CACTACCCACCTGCGTTGAAAGATG
LOC_Os02g08120
Os.17215.1.S1_at--63--2071Chr02:4296444..4296468 (25 bp)
ACTTCCTTAGGCTTGTGGTTCGAGA
LOC_Os02g08120
Os.17215.1.S1_at--1126--9371Chr02:4296425..4296449 (25 bp)
TCGAGATCCTCAGAAGTTGCGCAGT
LOC_Os02g08120
Os.17215.1.S1_at--845--5331Chr02:4296337..4296437 (25 bp)
GAAGTTGCGCAGTATCCTTGGAAGT
LOC_Os02g08120
Os.17215.1.S1_at--1041--2451Chr02:4296198..4296222 (25 bp)
AACAACATCTATGCATTCTGTGGGT
LOC_Os02g08120
Os.17215.1.S1_at--807--10571Chr02:4296183..4296207 (25 bp)
TTCTGTGGGTTGATTTCTGGCGAGC
LOC_Os02g08120
Os.17215.1.S1_at--45--9471Chr02:4296168..4296192 (25 bp)
TCTGGCGAGCAGTTCTATTCATCTG
LOC_Os02g08120
Os.17215.1.S1_at--618--2351Chr02:4294672..4294696 (25 bp)
AAAGCTCTCTTGAACTCTAAACCGA
LOC_Os02g08120
Os.17215.1.S1_at--155--2751Chr02:4294648..4294672 (25 bp)
AAGAAAAAGGCTGCACCCACTGGAC
LOC_Os02g08120
Os.17215.1.S1_at--858--1811Chr02:4294634..4294658 (25 bp)
ACCCACTGGACACGTTGAGACACAT
LOC_Os02g08120
Os.17215.1.S1_at--771--6091Chr02:4294601..4294625 (25 bp)
GAGTCAACCTGCTTCATACGAACAA
LOC_Os02g08120
Target Sequence 
CACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGAAAAGATAGGGAAGGATGGATCTTTCCATAAGAGACTGAA
CAAAGCTGGAATTTCTACAGTTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTATCCTTGGAA
GTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATGCAAAGACTTGTGTCTTAAGTGGAAAATATTACATATAT
TATTCAGACGNAGAATAGATCTATTGGTGCTATTTTCAACAACATCTATGCATTCTGTGGGTTGATTTCTGGCGAGCAGT
TCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATG
TATGCCATTGAATATGATGGTAAAGCTCTCTTGAACTCTAAACCGAAGAAAAAGGCTGCACCCACTGGACACGTTGAGAC
ACATCCTCCTCTGAGTCAACCTGCTTCATACGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis