Browse Element(s) Details


Os.17282.1.S1_at

Description gb:AK101259.1
DB_XREF= gi:32986468
TID=Os.17282.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032H18, full insert sequence.
FL= gb:AK060751.1 gb:AK065215.1 gb:AK101259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0867010/11ATP-NAD kinase family protein, expressed
LOC_Os04g356202/11expressed protein
LOC_Os11g085901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08640OsAffx.30890.1.S1_at10/1111+4593412..4596946hypothetical protein
LOC_Os11g08640Os.7070.1.S1_at1/1111+4593412..4596946hypothetical protein
LOC_Os11g08650NANA11+4607926..4608477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019363biological_processpyridine nucleotide biosynthesis
GO:0003951molecular_functionNAD+ kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17282.1.S1_at--408--7031Chr11:4625590..4625614 (25 bp)
GTACAGCATACTCTACTGCAGCAGG
LOC_Os11g08670
Os.17282.1.S1_at--712--5011NONE
GCAGGAGGCTCAATGGTCCATCCAA
NONE
Os.17282.1.S1_at--220--3331Chr11:4626457..4626481 (25 bp)
CACTCGCTATCATTTAGACCTGTCA
LOC_Os11g08670
Os.17282.1.S1_at--857--4271Chr11:4626487..4626511 (25 bp)
CCTGATTCTGCTCGTCTTGAATTGA
LOC_Os11g08670
Os.17282.1.S1_at--894--7051Chr11:4626696..4626720 (25 bp)
GTAACGCCTGGGTATCATTTGATGG
LOC_Os11g08670
Os.17282.1.S1_at--254--7651Chr11:4626745..4626769 (25 bp)
GGGAGACTCTGTTCAAATATCCATG
LOC_Os11g08670
Os.17282.1.S1_at--1090--5831Chr11:4626803..4626827 (25 bp)
GACCAAACTGGTGACTGGTTCCGCA
LOC_Os11g08670
Os.17282.1.S1_at--968--1952Chr11:4626816..4626840 (25 bp)
ACTGGTTCCGCAGCTTGATCAGGTG
LOC_Os11g08670
Os.17282.1.S1_at--418--7791Chr11:4626837..4626861 (25 bp)
GGTGCCTGAACTGGAACGAGCGACT
LOC_Os11g08670
Os.17282.1.S1_at--390--8313Chr11:4626889..4626913 (25 bp)
GGCTAGTTTTCCCTTGTACATACAT
LOC_Os11g08670
Os.17282.1.S1_at--1064--1691Chr11:4627012..4627036 (25 bp)
ACCAACCAACTACGTGTTCCATGGA
LOC_Os11g08670
Target Sequence 
GTACAGCATACTCTACTGCAGCAGGAGGCTCAATGGTCCATCCAAATGTCCCGTGTATGCTGTTTACTCCAATCTGCCCG
CACTCGCTATCATTTAGACCTGTCATCCTTCCTGATTCTGCTCGTCTTGAATTGAAGATTCCAGATGATGCAAGAAGTAA
CGCCTGGGTATCATTTGATGGCAAAAGGAGGCAGCAATTATCAAGGGGAGACTCTGTTCAAATATCCATGAGTCAGCACC
CGCTCCCAACAGTTAATAAATCTGACCAAACTGGTGACTGGTTCCGCAGCTTGATCAGGTGCCTGAACTGGAACGAGCGA
CTGGACCAGAAGGCATTATAGGCATTAGAGGCTAGTTTTCCCTTGTACATACATACATAGCCCTACACATATAGATACAC
TTTTTAACAGGTGCAATGGCTAATCAATATCGATAGTATATAGTTCCAATCNNNNNNANNNNNAANCCGACCACCAACCA
ACTACGTGTTCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis