Browse Element(s) Details


Os.17494.2.S1_at

Description gb:AK068502.1
DB_XREF= gi:32978520
TID=Os.17494.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155G18, full insert sequence.
FL= gb:AK068502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2819411/11phosphoglucomutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28150OsAffx.31802.2.S1_at5/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150OsAffx.31802.1.S1_at4/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150Os.50418.1.S1_at3/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28160OsAffx.4949.1.S1_at11/116+15995593..15999301hypothetical protein
LOC_Os06g28170OsAffx.31803.2.S1_at11/116+16001990..16005099hypothetical protein
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28220OsAffx.15641.1.S1_at11/116+16031679..16032240hypothetical protein
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17494.2.S1_at--774--7591Chr06:16018271..16018295 (25 bp)
GGGCACTCAAGCAGTCGAGACTTTT
LOC_Os06g28194
Os.17494.2.S1_at--319--5991Chr06:16018287..16018311 (25 bp)
GAGACTTTTAGGAACCATATCCAGG
LOC_Os06g28194
Os.17494.2.S1_at--86--2311Chr06:16022394..16022418 (25 bp)
AAATGGTTGGGTTCTCGATGACTGT
LOC_Os06g28194
Os.17494.2.S1_at--913--9411Chr06:16022447..16022471 (25 bp)
TCGTGGACACGAATGATGATCCTTT
LOC_Os06g28194
Os.17494.2.S1_at--648--5191Chr06:16031396..16031420 (25 bp)
GCAATAAATATGCAGTCTTCTATCC
LOC_Os06g28194
Os.17494.2.S1_at--874--9551Chr06:16031449..16031577 (25 bp)
TCTTCTTGACAGGTATCTACTGACG
LOC_Os06g28194
Os.17494.2.S1_at--945--6051Chr06:16031590..16031614 (25 bp)
GAGTTTGTTGACATCACCGAAGTAC
LOC_Os06g28194
Os.17494.2.S1_at--537--3071Chr06:16031644..16031668 (25 bp)
AATCATTAGCTTTCTACACTTTGTA
LOC_Os06g28194
Os.17494.2.S1_at--394--6751Chr06:16031670..16031694 (25 bp)
GTATAACTTTTACATCCCTACTGGA
LOC_Os06g28194
Os.17494.2.S1_at--735--5351Chr06:16031693..16031717 (25 bp)
GAAGATCGAACAAGAGCTTTGCTCT
LOC_Os06g28194
Os.17494.2.S1_at--467--6511Chr06:16031750..16031774 (25 bp)
GATATCCTTTCAATAGAAACCTGCA
LOC_Os06g28194
Target Sequence 
GGGCACTCAAGCAGTCGAGACTTTTAGGAACCATATCCAGGAAGGGAAACTAAATGGTTGGGTTCTCGATGACTGTGGGG
ATTGCTCGGTTANCCAAGGATGNCCTCGTGGACACGAATGATGATCCTTTTGATGTTGATGCGTACATGTACNANGGGCT
AAATTTTTTGATGAGTACAAGGGAGAACTGGGGTGGGTCCACATTCGCCANNAAGTGTACATAACCCCNACATAGCAATA
AATATGCAGTCTTCTATCCCNTGGTGGATGCAAATCCATGGCAAAGGATCTTCTTGACAGGTATCTACTGACGAGTGGAG
TCAATGAGTTTGTTGACATCACCGAAGTACNAAAGTTTGTAAAGTAGATATTATATTATAATCATTAGCTTTCTACACTT
TGTATGTATAACTTTTACATCCCTACTGGAAGATCGAACAAGAGCTTTGCTCTTTCTGTAGAGTATGTAGAGACTATAAT
ATTTTGATATCCTTTCAATAGAAACCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17494.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis