Browse Element(s) Details


Os.17509.1.S1_at

Description gb:AK099698.1
DB_XREF= gi:32984907
TID=Os.17509.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074K14, full insert sequence.
FL= gb:AK099698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5049011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50470Os.55450.1.S1_x_at11/112+30807616..30808850expressed protein
LOC_Os02g50470Os.55450.1.S1_at11/112+30807616..30808850expressed protein
LOC_Os02g50470OsAffx.28148.1.S1_x_at10/112+30807616..30808850expressed protein
LOC_Os02g50480Os.51036.1.A1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50480OsAffx.12578.1.S1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50490Os.17509.1.S1_at11/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.15414.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.22010.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50500NANA2+30837115..30837549transposon protein, putative, unclassified
LOC_Os02g50510OsAffx.22848.3.S1_x_at4/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50510OsAffx.22848.4.S1_x_at1/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50520NANA2+30847106..30847687transposon protein, putative, unclassified
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50540OsAffx.32166.1771.S1_s_at9/112+30853369..30854873expressed protein
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17509.1.S1_at--390--10631Chr02:30836280..30836304 (25 bp)
TTCGACCACTGGTTCGGTCGCCGGA
LOC_Os02g50490
Os.17509.1.S1_at--255--3951Chr02:30836429..30836453 (25 bp)
CGGCATGTTCGCCAAGCTGAACAGG
LOC_Os02g50490
Os.17509.1.S1_at--1156--6931Chr02:30836503..30836527 (25 bp)
GTACGGCGGCCGATGTGTAAATAGA
LOC_Os02g50490
Os.17509.1.S1_at--252--3931Chr02:30836506..30836530 (25 bp)
CGGCGGCCGATGTGTAAATAGATTA
LOC_Os02g50490
Os.17509.1.S1_at--372--10551Chr02:30836579..30836603 (25 bp)
TTCTTCTCCTTCTTTGGAGATCTTC
LOC_Os02g50490
Os.17509.1.S1_at--1137--10231Chr02:30836591..30836615 (25 bp)
TTTGGAGATCTTCTTTTCACACAGA
LOC_Os02g50490
Os.17509.1.S1_at--342--6431Chr02:30836597..30836621 (25 bp)
GATCTTCTTTTCACACAGATTGGAA
LOC_Os02g50490
Os.17509.1.S1_at--1047--1911Chr02:30836653..30836677 (25 bp)
ACGGGTGGAGGCATTCGCATGCAAA
LOC_Os02g50490
Os.17509.1.S1_at--4--9031Chr02:30836672..30836696 (25 bp)
TGCAAATGTAAATTCGCCACCGGTA
LOC_Os02g50490
Os.17509.1.S1_at--53--7031Chr02:30836679..30836703 (25 bp)
GTAAATTCGCCACCGGTACATACGA
LOC_Os02g50490
Os.17509.1.S1_at--1009--9311Chr02:30836685..30836709 (25 bp)
TCGCCACCGGTACATACGAAGAAAA
LOC_Os02g50490
Target Sequence 
TTCGACCACTGGTTCGGTCGCCGGAGCTCCAACCCGAACGTCCTCGTCGGCGCCATCGTCGGTGGGCCGGACCGGCGGGA
CAGGTTCAGGGACAACCGGGAGAACTACATGCAGACGGAGGCGTGCACGTACAACACGGCGCCCATGGTCGGCATGTTCG
CCAAGCTGAACAGGATGGCCCGGCAGNAGAGGGAGCAGGAGGAGGTGGCGGCTCCGGCGAGGAGTACGGCGGCCGATGTG
TAAATAGATTAGGTTATAGAGGGGGGGCTGTACAATTTTCCCCATTCTTTTGTTCATTTTTCTTCTCCTTCTTTGGAGAT
CTTCTTTTCACACAGATTGGAAAAATTCATTTTGTATACAAAAAGAGAAAGGGACGGGTGGAGGCATTCGCATGCAAATG
TAAATTCGCCACCGGTACATACGAAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis