Browse Element(s) Details


Os.17524.1.S1_at

Description gb:AK106339.1
DB_XREF= gi:32991548
TID=Os.17524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G06, full insert sequence.
FL= gb:AK106339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0376011/11S-ribonuclease binding protein SBP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17524.1.S1_at--718--7671Chr02:1575834..1575858 (25 bp)
GGGTTGCATTGCAGTTGCTGAAACA
LOC_Os02g03760
Os.17524.1.S1_at--950--7311Chr02:1575704..1575728 (25 bp)
GTGCATCTGAAGTTACACCCCAATC
LOC_Os02g03760
Os.17524.1.S1_at--241--7011Chr02:1575667..1575691 (25 bp)
GTACTGAATACTGTTGCACGCATCA
LOC_Os02g03760
Os.17524.1.S1_at--847--411Chr02:1575646..1575670 (25 bp)
ATCATGCATGCCGTTCAGGTAAGGT
LOC_Os02g03760
Os.17524.1.S1_at--331--1031Chr02:1575630..1575654 (25 bp)
AGGTAAGGTTCATGATTGCTGGCAC
LOC_Os02g03760
Os.17524.1.S1_at--835--4711Chr02:1575613..1575637 (25 bp)
GCTGGCACCTGGAGCAATGGCACAT
LOC_Os02g03760
Os.17524.1.S1_at--97--671Chr02:1575590..1575614 (25 bp)
ATGAACATCGAACGTGGCTTGCCAC
LOC_Os02g03760
Os.17524.1.S1_at--848--8291Chr02:1575575..1575599 (25 bp)
GGCTTGCCACATCTCAATGCTATGG
LOC_Os02g03760
Os.17524.1.S1_at--560--5511Chr02:1575484..1575508 (25 bp)
GAAAATTTCCTGTGTTCCAAACGAT
LOC_Os02g03760
Os.17524.1.S1_at--606--7411Chr02:1575473..1575497 (25 bp)
GTGTTCCAAACGATGCCTAGTGAGG
LOC_Os02g03760
Os.17524.1.S1_at--430--7391Chr02:1575454..1575478 (25 bp)
GTGAGGATTAATGCTGCCTATGATC
LOC_Os02g03760
Target Sequence 
GGGTTGCATTGCAGTTGCTGAAACAGAAATAATGTGAGGAGCATGTGCAACAGCCAACAGCACACGCAATGCAATGTTAA
GGAGGAGTGGGCAGGCAAAGCAGGGGCTTCTGTGCAAACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAATCAGCAC
CCAGATAGTACTGAATACTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTTCATGATTGCTGGCACCTGGAGCAATG
GCACATGAACATCGAACGTGGCTTGCCACATCTCAATGCTATGGAGAATGATGATGCGAAAACTGCGGAAAAAGGAGGAT
TTTTTTCTTTGATTCTTGTGGAAATCGTAAGAAAATTTCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGCTGCCTA
TGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis