Browse Element(s) Details


Os.17542.1.S1_at

Description gb:AK067284.1
DB_XREF= gi:32977302
TID=Os.17542.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100P21, full insert sequence.
FL= gb:AK067284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g371308/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17542.1.S1_at--471--4191Chr05:21616616..21616640 (25 bp)
CCCTCTTTGTTTTCATATATGGCAT
LOC_Os05g37130
Os.17542.1.S1_at--371--3131Chr05:21616483..21616507 (25 bp)
AATTTTCATGCCAACAGGCCAGCCA
LOC_Os05g37130
Os.17542.1.S1_at--1117--871Chr05:21616468..21616492 (25 bp)
AGGCCAGCCAATATAGCTCCTGATA
LOC_Os05g37130
Os.17542.1.S1_at--727--4791Chr05:21616453..21616477 (25 bp)
GCTCCTGATAATATGTTGCTCCATT
LOC_Os05g37130
Os.17542.1.S1_at--3--6471Chr05:21616447..21616471 (25 bp)
GATAATATGTTGCTCCATTCATTTA
LOC_Os05g37130
Os.17542.1.S1_at--742--6671Chr05:21616439..21616463 (25 bp)
GTTGCTCCATTCATTTATAATGCAG
LOC_Os05g37130
Os.17542.1.S1_at--590--8211Chr05:21616298..21616322 (25 bp)
GGAATCAGATTCAAGCCAAGAGTTA
LOC_Os05g37130
Os.17542.1.S1_at--981--10211Chr05:21616146..21616170 (25 bp)
TATTCATTTGGTTCCCAGTTATACG
LOC_Os05g37130
Os.17542.1.S1_at--630--10231Chr05:21616140..21616164 (25 bp)
TTTGGTTCCCAGTTATACGTAGATC
NONE
Os.17542.1.S1_at--534--7891Chr05:21616138..21616161 (24 bp)
GGTTCCCAGTTATACGTAGATCAGG
NONE
Os.17542.1.S1_at--390--10171NONE
TATACGTAGATCAGGATGTGGTTGA
NONE
Target Sequence 
CCCTCTTTGTTTTCATATATGGCATGNTGCNCCAAAATGACAAATTTNTTTGAAGNCCAGTTTAATTTNTNCCAAGCCTA
GGGAAACAAGTTTNTGTNTGAAACTTGCATGTAAAATNTGCAATTATGNTGNTAATTTTCATGCCAACAGGCCAGCCAAT
ATAGCTCCTGATAATATGTTGCTCCATTCATTTATAATGCAGGATAGCAGGGTNCATTTTTCATNTATAGTTTGGATTTT
AAAGATTGTAATCATAGAGCNCAGGNGAAGGGTCATGCATATCATAGGCNCTCCTACNCAGGAAATNGTTTTCCCCAAGG
AATCAGATTCAAGCCAAGAGTTAAATTGGAAACNCAGGNGGCAGTGACTTGTTNTGTAGCTGTGGNGATTCNCATCNCTT
GCTGATAGAGAGNGATAGNGTTTTGTTTGNTTNTATTATTGCTGTAAAAAAAACAGTAAGTTTAATAGTNTATTCATTTG
GTTCCCAGTTATACGTAGATCAGGATGTGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis