Browse Element(s) Details

Os.17665.2.S1_at

Description

gb:AK061625.1
DB_XREF= gi:32971643
TID=Os.17665.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31150 TF-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D01, full insert sequence.
FL= gb:AK061625.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14190	8/11	NF-X1 type zinc finger family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14150	Os.31312.2.S1_x_at	4/11	6	+	7891439..7894857	retrotransposon protein, putative, unclassified
LOC_Os06g14150	Os.31312.5.S1_x_at	4/11	6	+	7891439..7894857	retrotransposon protein, putative, unclassified
LOC_Os06g14160	NA	NA	6	+	7895480..7900970	retrotransposon protein, putative, unclassified
LOC_Os06g14170	OsAffx.4836.1.S1_at	11/11	6	+	7905229..7906515	hypothetical protein
LOC_Os06g14170	OsAffx.10596.1.S1_at	1/11	6	+	7905229..7906515	hypothetical protein
LOC_Os06g14180	OsAffx.15421.1.S1_at	11/11	6	+	7914592..7915553	expressed protein
LOC_Os06g14190	Os.17665.1.S1_x_at	11/11	6	+	7919598..7923038	NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190	Os.17665.2.S1_at	8/11	6	+	7919598..7923038	NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200	OsAffx.27630.1.S1_at	11/11	6	+	7924698..7926407	Zinc finger, C3HC4 type family protein
LOC_Os06g14210	NA	NA	6	+	7928550..7929332	expressed protein
LOC_Os06g14220	Os.53026.1.S1_at	10/11	6	+	7932985..7934242	sulfotransferase family protein, putative, expressed
LOC_Os06g14230	NA	NA	6	+	7936672..7936926	hypothetical protein
LOC_Os06g14240	Os.9950.1.S1_at	11/11	6	+	7939955..7940681	Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250	Os.35344.18.S1_x_at	10/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	Os.35344.3.S1_x_at	9/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	OsAffx.22940.5.S1_x_at	3/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17665.2.S1_at--25--941	1	Chr06:7919694..7919718 (25 bp)	TCGTAGATTGCCGACCTCTGCTTGC	LOC_Os06g14190
Os.17665.2.S1_at--755--125	1	Chr06:7919690..7919714 (25 bp)	AGATTGCCGACCTCTGCTTGCTCTG	LOC_Os06g14190
Os.17665.2.S1_at--708--363	1	Chr06:7919674..7919698 (25 bp)	CTTGCTCTGTAGTAGTCTGTTGTCT	LOC_Os06g14190
Os.17665.2.S1_at--752--481	1	Chr06:7919671..7919695 (25 bp)	GCTCTGTAGTAGTCTGTTGTCTGAA	LOC_Os06g14190
Os.17665.2.S1_at--948--1005	1	Chr06:7919662..7919686 (25 bp)	TAGTCTGTTGTCTGAAATGGTTCCT	LOC_Os06g14190
Os.17665.2.S1_at--845--229	1	Chr06:7919648..7919672 (25 bp)	AAATGGTTCCTTGTGTCGTAGTCCT	LOC_Os06g14190
Os.17665.2.S1_at--929--789	1	Chr06:7919644..7919668 (25 bp)	GGTTCCTTGTGTCGTAGTCCTACAA	LOC_Os06g14190
Os.17665.2.S1_at--173--115	1	NONE	AGTCCTACAAGAGTTGCATCCGCTG	NONE
Os.17665.2.S1_at--1116--123	1	NONE	AGTTGCATCCGCTGTTTATCTATAA	NONE
Os.17665.2.S1_at--157--499	1	Chr06:7919614..7919780 (25 bp)	GCATCCGCTGTTTATCTATAATTCT	LOC_Os06g14190
Os.17665.2.S1_at--797--863	1	Chr06:7919582..7919606 (25 bp)	TGGGTACCTGGTATTGTTCAGATAA	NONE

Target Sequence

TCGTAGATTGCCGACCTCTGCTTGCTCTGTAGTAGTCTGTTGTCTGAAATGGTTCCTTGTGTCGTAGTCCTACAAGAGTT
GCATCCGCTGTTTATCTATAATTCTATATNGTNTGGGTACCTGGTATTGTTCAGATAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis