Browse Element(s) Details


Os.17922.1.S1_at

Description gb:AK120917.1
DB_XREF= gi:37990540
TID=Os.17922.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30852 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034L01, full insert sequence.
FL= gb:AK120917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g583206/11BRICK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007163biological_processestablishment and/or maintenance of cell polarity
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17922.1.S1_at--147--9271NONE
TCCTCCGATTCGAAGCTACTACGAA
NONE
Os.17922.1.S1_at--517--5951Chr02:35674220..35674244 (25 bp)
GAGCAAACTTGCGTCCTTGAATGAG
LOC_Os02g58320
Os.17922.1.S1_at--2--7391Chr02:35674150..35674174 (25 bp)
GTGAGCAGCGCAACAACCAATCCAT
LOC_Os02g58320
Os.17922.1.S1_at--402--4391Chr02:35674134..35674158 (25 bp)
CCAATCCATCCGTTTTCAACTAGTA
LOC_Os02g58320
Os.17922.1.S1_at--1015--3431Chr02:35674105..35674129 (25 bp)
CAGTTAAGGGCTGCTTGTCTGCACA
LOC_Os02g58320
Os.17922.1.S1_at--434--1111Chr02:35674075..35674099 (25 bp)
AGTGCTTTCAATGTGTTATGGGTTC
LOC_Os02g58320
Os.17922.1.S1_at--370--3691Chr02:35674038..35674062 (25 bp)
CTTTGGATGTCTGTATTGTGGGTGC
LOC_Os02g58320
Os.17922.1.S1_at--225--9471Chr02:35673947..35673971 (25 bp)
TCTGTATGCAGTGCCAGTAGCGTGC
NONE
Os.17922.1.S1_at--75--1191Chr02:35673932..35673956 (25 bp)
AGTAGCGTGCAAGGCAGCTTCTTTT
NONE
Os.17922.1.S1_at--501--1551Chr02:35673917..35673941 (25 bp)
AGCTTCTTTTCTACTCAATTCCATG
NONE
Os.17922.1.S1_at--338--7351Chr02:35673840..35673864 (25 bp)
GTGCAAACCTGCAATGTTGCCTGCT
NONE
Target Sequence 
TCCTCCGATTCGAAGCTACTACGAAGAGCAAACTTGCGTCCTTGAATGAGAAGCTGGACATCCTAGAGCGGAAACTGGAG
GTGCTTGAGGTTCAAGTGAGCAGCGCAACAACCAATCCATCCGTTTTCAACTAGTAAGTGCAGTTAAGGGCTGCTTGTCT
GCACATAAGTAGTGCTTTCAATGTGTTATGGGTTCAAAAGGACAGAGCTTTGGATGTCTGTATTGTGGGTGCAAGAGGAG
AGGTTGTTCCTGTGTGTTNTNTNTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAATCTGTATGCAGTGCCAGTAGC
GTGCAAGGCAGCTTCTTTTCTACTCAATTCCATGTACAATTGTAACGTGTTCCAAGTTTGTGTGGAGATAACNAACCGAT
TGTTGAGTGCAAACCTGCAATGTTGCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis