Browse Element(s) Details


Os.17937.3.S1_at

Description gb:NM_186719.1
DB_XREF= gi:34900523
TID=Os.17937.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0407H12.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0407H12.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g338691/11expressed protein
LOC_Os09g100201/11transposon protein, putative, unclassified
LOC_Os05g313901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17937.3.S1_at--831--2731NONE
AAGACAGAGTTGCTTTACGCCTTCT
NONE
Os.17937.3.S1_at--381--8711Chr07:7580928..7580952 (25 bp)
TGTCCATTGTCGCAGCTTCAGAGTC
NONE
Os.17937.3.S1_at--1151--5851NONE
GAGCCACAACACATTAACCCGACTA
NONE
Os.17937.3.S1_at--401--26126Chr12:17193428..17193447 (20 bp)
AACCCGACTATTGGCGACTTGATAA
NONE
Os.17937.3.S1_at--416--5691Chr07:7578249..7578273 (25 bp)
GACTTGATAATTTCCATCGGCCGAT
NONE
Os.17937.3.S1_at--1125--6453Chr01:12555765..12555892 (25 bp)
GATAATTTCCATCGGCCGATTCCAG
NONE
Os.17937.3.S1_at--62--65921Chr12:22188913..22188936 (24 bp)
GATTCCAGGACTCTGAAGCCGATAA
NONE
Os.17937.3.S1_at--946--2651Chr07:7578212..7578236 (25 bp)
AAGCCGATAATGACTCTAGGCCGAT
NONE
Os.17937.3.S1_at--874--511Chr07:7578130..7578154 (25 bp)
ATCCCGTTCCCGAGCAAGGGAATCA
NONE
Os.17937.3.S1_at--162--5251Chr07:7578111..7578135 (25 bp)
GAATCAACAGCCAAGAGCATCGCCT
NONE
Os.17937.3.S1_at--608--2771Chr07:7578099..7578123 (25 bp)
AAGAGCATCGCCTCGGTCCGCTTCA
NONE
Target Sequence 
AAGACAGAGTTGCTTTACGCCTTCTCCTGTTCCCTGTCCATTGTCGCAGCTTCAGAGTCTGTCAGAGAGGCGGTCGTGAC
ACGCCGATGGGTCGAGCACTCATCCGCCATCATCGAGCCACAACACATTAACCCGACTATTGGCGACTTGATAATTTCCA
TCGGCCGATTCCAGGACTCTGAAGCCGATAATGACTCTAGGCCGATGATGACTTTGGGGGCTTACCAAATTTCACTGTTA
ACACTCGCGCGCCATCCCGTCCCATCCCGTTCCCGAGCAAGGGAATCAACAGCCAAGAGCATCGCCTCGGTCCGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17937.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis