Browse Element(s) Details


Os.18305.1.S1_at

Description gb:AK101790.1
DB_XREF= gi:32986999
TID=Os.18305.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065J10, full insert sequence.
FL= gb:AK101790.1 gb:AK066579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5055011/11Polyprenyl synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18305.1.S1_at--272--7891Chr05:28903147..28903171 (25 bp)
GGTTAAGACCAGCATTAGTTTTTCT
LOC_Os05g50550
Os.18305.1.S1_at--651--10791Chr05:28903295..28903314 (20 bp)
TTGTTGGAGCTTACTACAGAGCATC
LOC_Os05g50550
Os.18305.1.S1_at--1123--2131Chr05:28903305..28903329 (25 bp)
ACAGAGCATCAACGCCTGGCAGAGA
LOC_Os05g50550
Os.18305.1.S1_at--684--2231Chr05:28903692..28903716 (25 bp)
ACAATCTTCTTGGTTCCTAGCGAAC
LOC_Os05g50550
Os.18305.1.S1_at--877--4951Chr05:28903870..28903894 (25 bp)
GCATCTACTCTTTTTGACTGCGACG
LOC_Os05g50550
Os.18305.1.S1_at--490--151Chr05:28903925..28903949 (25 bp)
ATTATAAAACCGCTTCGTTGCTCGC
LOC_Os05g50550
Os.18305.1.S1_at--631--6411Chr05:28903961..28903985 (25 bp)
GATCTGCTGCAATATTCAGTGGTGT
LOC_Os05g50550
Os.18305.1.S1_at--303--7751Chr05:28903981..28904005 (25 bp)
GGTGTAAGCACCACTATATGCGAAC
LOC_Os05g50550
Os.18305.1.S1_at--880--291Chr05:28904016..28904040 (25 bp)
ATACGGCAGGAATCTCGGGCTCTCG
LOC_Os05g50550
Os.18305.1.S1_at--60--3991Chr05:28904031..28904055 (25 bp)
CGGGCTCTCGTTCCAGGTAGTAGAT
LOC_Os05g50550
Os.18305.1.S1_at--449--1311Chr05:28904052..28904076 (25 bp)
AGATGATATTCTTGACTTTACCCAA
LOC_Os05g50550
Target Sequence 
GGTTAAGACCAGCATTAGTTTTTCTGGTGTCCAGAGCAACTGCTGAATTAGCTGGTTTGTTGGAGCTTACTACAGAGCAT
CAACGCCTGGCAGAGATCATAGAGATGATTCACACAGCAAGTTTAATACATGATGATGTCATAGATGATAGTGGCATGAG
GAGAGGGAAAGAAACTATTCATCAGCTATATGGAACACGGGTGGCCGTACTTGCTGGTGATTTTATGTTTGCACAATCTT
CTTGGTTCCTAGCGAACTTAGAAAACATCGAAGTTATTAAGCTCATCAGCCAGGTGATCAAGGACTTTGCCAGTGGTGAG
ATAAAACAAGCATCTACTCTTTTTGACTGCGACGTCACCCTTGATGATTACTTGCTCAAGAGCTATTATAAAACCGCTTC
GTTGCTCGCCTCAAGCACAAGATCTGCTGCAATATTCAGTGGTGTAAGCACCACTATATGCGAACAAATGTATGAATACG
GCAGGAATCTCGGGCTCTCGTTCCAGGTAGTAGATGATATTCTTGACTTTACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis