Browse Element(s) Details


Os.18421.1.S1_a_at

Description gb:AK061126.1
DB_XREF= gi:32971144
TID=Os.18421.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative cellulase (OJ1384D03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G12, full insert sequence.
FL= gb:AK104060.1 gb:AK061126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0180011/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0042546biological_processcell wall biosynthesis
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18421.1.S1_a_at--1151--1931Chr03:471561..471585 (25 bp)
ACGGCGGCCGCTACAAGTCCGACTA
LOC_Os03g01800
Os.18421.1.S1_a_at--479--5051Chr03:471386..471410 (25 bp)
GCAGCAGAGGTCCATGGTCTACTAC
LOC_Os03g01800
Os.18421.1.S1_a_at--820--931Chr03:471354..471378 (25 bp)
AGGACTACTCCAGGAATCACGCCAA
LOC_Os03g01800
Os.18421.1.S1_a_at--126--2511Chr03:471331..471355 (25 bp)
AACTACCCCGAGTGCTAGTGGTTGA
LOC_Os03g01800
Os.18421.1.S1_a_at--929--1091Chr03:471315..471339 (25 bp)
AGTGGTTGAGCCATGCATCTTCAGT
LOC_Os03g01800
Os.18421.1.S1_a_at--547--6831Chr03:471282..471306 (25 bp)
GTTTCATGTGTTGTGTGCACCACGT
LOC_Os03g01800
Os.18421.1.S1_a_at--1041--10831Chr03:471272..471296 (25 bp)
TTGTGTGCACCACGTAGTACGAGCA
LOC_Os03g01800
Os.18421.1.S1_a_at--401--6991Chr03:471256..471280 (25 bp)
GTACGAGCACCAACACGTATCTACT
LOC_Os03g01800
Os.18421.1.S1_a_at--71--6911Chr03:471240..471264 (25 bp)
GTATCTACTATTACCCTCATCATAA
LOC_Os03g01800
Os.18421.1.S1_a_at--850--51Chr03:471198..471222 (25 bp)
ATTGAGGTGTGCAGCTGTGTCACCC
LOC_Os03g01800
Os.18421.1.S1_a_at--672--2451Chr03:471173..471197 (25 bp)
AAAATTTCACTTCGACCTGCAATGC
LOC_Os03g01800
Target Sequence 
ACGGCGGCCGCTACAAGTCCGACTACCGCTACCAGCCCTTCGTCTCGCGCTACCGAGACCTCAAGATCGCCGGCTGCGAG
GCCGCCGCGCCGGCGAGCTGCCAGCCCGTGCCGGCGTCGCCGTCGGGCGCCACCGGCGAGCTCAGCGCGCAGCAGAAGGC
GGCCATGAGGTGGGCGCAGCAGAGGTCCATGGTCTACTACTACTGCCAGGACTACTCCAGGAATCACGCCAACTACCCCG
AGTGCTAGTGGTTGAGCCATGCATCTTCAGTTTCACATCGTTTCATGTGTTGTGTGCACCACGTAGTACGAGCACCAACA
CGTATCTACTATTACCCTCATCATAATTATTGTGTACGATTGGATTGAGGTGTGCAGCTGTGTCACCCAAAATTTCACTT
CGACCTGCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18421.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis