Browse Element(s) Details


Os.18440.1.S1_at

Description gb:AK072445.1
DB_XREF= gi:32982468
TID=Os.18440.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110M11, full insert sequence.
FL= gb:AK072445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3561011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18440.1.S1_at--906--7851Chr02:21413938..21413962 (25 bp)
GGTATTTCCGTGATTAATTGCCTAA
LOC_Os02g35610
Os.18440.1.S1_at--1014--3711Chr02:21414225..21414249 (25 bp)
CTACCTGATCAGTGCAACCAAGATA
LOC_Os02g35610
Os.18440.1.S1_at--1009--2411Chr02:21414261..21414285 (25 bp)
AAAACTACCAAATCCGCGATGCGCT
LOC_Os02g35610
Os.18440.1.S1_at--460--6351Chr02:21414278..21414302 (25 bp)
GATGCGCTTGATTGATCAGCCTTGT
LOC_Os02g35610
Os.18440.1.S1_at--266--2951Chr02:21414333..21414357 (25 bp)
AAGGCGATGATTTCTGCGTTGCGTC
LOC_Os02g35610
Os.18440.1.S1_at--462--4631Chr02:21414348..21414372 (25 bp)
GCGTTGCGTCGCATAATCTGAACAA
LOC_Os02g35610
Os.18440.1.S1_at--644--2871Chr02:21414377..21414401 (25 bp)
AAGTGGCGTGTGCTGTACACTGCTA
LOC_Os02g35610
Os.18440.1.S1_at--133--5271Chr02:21414412..21414436 (25 bp)
GAATGGGTTGTACTCCTAGAAGTTA
LOC_Os02g35610
Os.18440.1.S1_at--909--1451Chr02:21414429..21414453 (25 bp)
AGAAGTTAGTCTGCACAGGGCGTGT
LOC_Os02g35610
Os.18440.1.S1_at--375--3471Chr02:21414444..21414468 (25 bp)
CAGGGCGTGTGTTATTTGTTTATCA
LOC_Os02g35610
Os.18440.1.S1_at--727--7011Chr02:21414485..21414509 (25 bp)
GTACTACATTTCATCTTTCTATCAG
LOC_Os02g35610
Target Sequence 
GGTATTTCCGTGATTAATTGCCTAACAGGTGTATTATGTGCTGCAGGTGAAGTGGTTGGAGCAATCTTTACCAAGCACCA
ATGTTGTTGATCTTTTCCAGTTTGAGTTCATAAGGTCTGCCATGAGGCCCATGACCATCATGTAATTTGCAACCAGGGAG
ACATGAATCATGTACTTTTATATCAATGTTCTGTGCTTATAATCCAGCATTTGGAAATTGGAAGTGACACTTATAATTCT
GAAGTTATGTGAATTCTTCCATGCCCTTGTTTGAATTATGNCCTGCACTACCTGATCAGTGCAACCAAGATAACTTTCAG
ATAAAAACTACCAAATCCGCGATGCGCTTGATTGATCAGCCTTGTTGGTTTGGCCTTTTTTATATGGAAGTCAGCAAGGC
GATGATTTCTGCGTTGCGTCGCATAATCTGAACAAAAGCAAGTGGCGTGTGCTGTACACTGCTATTGAACAGATGAATGG
GTTGTACTCCTAGAAGTTAGTCTGCACAGGGCGTGTGTTATTTGTTTATCATCATTGTAAAATACTAGTACTACATTTCA
TCTTTCTATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis