Browse Element(s) Details


Os.18659.1.S1_s_at

Description gb:AK099623.1
DB_XREF= gi:32984832
TID=Os.18659.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053G12, full insert sequence.
FL= gb:AK099623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5636011/11expressed protein
LOC_Os07g2891011/11LSD1 zinc finger family protein, expressed
LOC_Os05g513801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380Os.49913.1.S1_at11/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56380OsAffx.24548.1.S1_x_at1/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18659.1.S1_s_at--486--6852Chr07:16952843..16952867 (25 bp)
GTTTGCTTTTCAGTCTAGGATAGAG
LOC_Os07g28910
Os.18659.1.S1_s_at--194--3712Chr07:16952857..16952881 (25 bp)
CTAGGATAGAGATTTACATGTCAAA
LOC_Os07g28910
Os.18659.1.S1_s_at--432--2052Chr07:16952892..16952916 (25 bp)
ACTTTTGAAAGTGTAATGCGATGCA
LOC_Os07g28910
Os.18659.1.S1_s_at--225--2312Chr07:16952943..16952967 (25 bp)
AAAGGATCCATGTCATTTGCTGTCA
LOC_Os07g28910
Os.18659.1.S1_s_at--443--6372Chr07:16952947..16952971 (25 bp)
GATCCATGTCATTTGCTGTCAGAAT
LOC_Os07g28910
Os.18659.1.S1_s_at--1056--9113Chr07:16952960..16952984 (25 bp)
TGCTGTCAGAATAGTAATGTTTGTT
LOC_Os07g28910
Os.18659.1.S1_s_at--408--712Chr07:16952976..16953000 (25 bp)
ATGTTTGTTACTTAATGAGGTTTGT
LOC_Os07g28910
Os.18659.1.S1_s_at--90--8672Chr07:16952998..16953022 (25 bp)
TGTTACAAACCTTAATTACAGGAAT
LOC_Os07g28910
Os.18659.1.S1_s_at--846--9532Chr07:16953037..16953061 (25 bp)
TCTTAACTTTTTACACTCCTATTTG
LOC_Os07g28910
Os.18659.1.S1_s_at--1073--10472Chr07:16953047..16953071 (25 bp)
TTACACTCCTATTTGTAGATGTACA
LOC_Os07g28910
Os.18659.1.S1_s_at--840--7032Chr07:16953067..16953091 (25 bp)
GTACAATTATCAGATGGACTATTTT
LOC_Os07g28910
Target Sequence 
GTTTGCTTTTCAGTCTAGGATAGAGATTTACATGTCAAAGAGTCAAGTGCACTTTTGAAAGTGTAATGCGATGCAAGTAA
AAACAATTTTGGACAAGATCAAAAGGATCCATGTCATTTGCTGTCAGAATAGTAATGTTTGTTACTTAATGAGGTTTGTT
ACAAACCTTAATTACAGGAATATCATTGTAGTAGTTCTTAACTTTTTACACTCCTATTTGTAGATGTACATATATTTATG
TACAATTATCAGATGGACTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18659.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis