Browse Element(s) Details

Os.18952.1.S1_at

Description

gb:AK100316.1
DB_XREF= gi:32985525
TID=Os.18952.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078P03, full insert sequence.
FL= gb:AK100316.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07200	11/11	Syntaxin 132, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07140	Os.4216.1.S1_a_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140	Os.4216.2.S1_x_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150	OsAffx.22574.1.S1_at	8/11	6	+	3424691..3425038	hypothetical protein
LOC_Os06g07160	Os.33725.1.S1_at	11/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07160	Os.51581.1.S1_at	1/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07170	NA	NA	6	+	3432634..3433780	hypothetical protein
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein
LOC_Os06g07200	OsAffx.15295.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	Os.18952.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	OsAffx.15295.1.S1_x_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07210	Os.4222.1.S1_at	11/11	6	+	3448701..3453748	Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220	Os.4223.1.S1_s_at	11/11	6	+	3454801..3455812	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230	Os.9247.2.S1_x_at	11/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230	Os.9247.1.S1_at	9/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240	NA	NA	6	+	3467971..3468919	expressed protein
LOC_Os06g07250	Os.22995.1.S1_at	1/11	6	+	3469796..3474964	Protein GOS9, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006944	biological_process	membrane fusion
GO:0005886	cellular_component	plasma membrane
GO:0005486	molecular_function	t-SNARE activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18952.1.S1_at--520--975	1	Chr06:3444231..3444255 (25 bp)	TAAGTAGAAAAACCTGCATCTCAGA	LOC_Os06g07200
Os.18952.1.S1_at--1048--355	1	Chr06:3444204..3444228 (25 bp)	CATCATGTTCATGTCGATTTTGGCT	LOC_Os06g07200
Os.18952.1.S1_at--99--675	1	Chr06:3444198..3444222 (25 bp)	GTTCATGTCGATTTTGGCTGGCAAT	LOC_Os06g07200
Os.18952.1.S1_at--436--1041	2	Chr06:3444187..3444211 (25 bp)	TTTTGGCTGGCAATGTTTATCTTTT	LOC_Os06g07200
Os.18952.1.S1_at--848--733	1	Chr06:3444162..3444186 (25 bp)	GTGCAGTTCTACTTCTAGTTGTGTA	LOC_Os06g07200
Os.18952.1.S1_at--931--397	1	Chr06:3444130..3444154 (25 bp)	CGGTGTGGTAGTGCGTCATGTACAT	LOC_Os06g07200
Os.18952.1.S1_at--431--859	1	Chr06:3444125..3444149 (25 bp)	TGGTAGTGCGTCATGTACATTCTCT	LOC_Os06g07200
Os.18952.1.S1_at--612--207	1	Chr06:3444109..3444133 (25 bp)	ACATTCTCTGAAATTTTGGGTGCGA	LOC_Os06g07200
Os.18952.1.S1_at--291--771	1	Chr06:3444092..3444116 (25 bp)	GGGTGCGAACTTATTCAGTTCTCTG	LOC_Os06g07200
Os.18952.1.S1_at--1031--1021	1	Chr06:3444081..3444105 (25 bp)	TATTCAGTTCTCTGTACTTCAAATA	LOC_Os06g07200
Os.18952.1.S1_at--474--493	1	Chr06:3444045..3444069 (25 bp)	GCTTGATCATACATAATTTTGCTCA	LOC_Os06g07200

Target Sequence

TAAGTAGAAAAACCTGCATCTCAGAAGCATCATGTTCATGTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTA
CTTCTAGTTGTGTATATGCCNCGGTGTGGTAGTGCGTCATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTC
TCTGTACTTCAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis