Browse Element(s) Details


Os.19112.2.S1_x_at

Description gb:AK060242.1
DB_XREF= gi:32970260
TID=Os.19112.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033010C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-F10, full insert sequence.
FL= gb:AK060242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19112.2.S1_x_at--1010--6091Chr03:12281318..12281342 (25 bp)
GAGTCCTTGCTTGCTAGAACACTGT
LOC_Os03g21530
Os.19112.2.S1_x_at--951--2471Chr03:12281335..12281359 (25 bp)
AACACTGTCCAGACGGAGTGCCAAT
LOC_Os03g21530
Os.19112.2.S1_x_at--636--6111Chr03:12281350..12281374 (25 bp)
GAGTGCCAATCTAATGCAACTTGTA
LOC_Os03g21530
Os.19112.2.S1_x_at--436--5151Chr03:12281365..12281389 (25 bp)
GCAACTTGTATATGGCCAAGCTTCA
LOC_Os03g21530
Os.19112.2.S1_x_at--324--6611Chr03:12282048..12282072 (25 bp)
GATTGGTCTGACGAAGATCTCATCA
LOC_Os03g21530
Os.19112.2.S1_x_at--211--9511Chr03:12282065..12282089 (25 bp)
TCTCATCAAGAGCATTCGTGACCGT
LOC_Os03g21530
Os.19112.2.S1_x_at--735--91Chr03:12282078..12282102 (25 bp)
ATTCGTGACCGTTTCGTGACTGGAA
LOC_Os03g21530
Os.19112.2.S1_x_at--15--5611Chr03:12282100..12282124 (25 bp)
GAAATTGGTCAAAAGCAGCTCTAAG
LOC_Os03g21530
Os.19112.2.S1_x_at--626--5991Chr03:12282189..12282213 (25 bp)
GAGACTGGTGAGGTGCATACAAGCA
LOC_Os03g21530
Os.19112.2.S1_x_at--532--5371Chr03:12282280..12282304 (25 bp)
GAAGACTCAAGAAGCTCGCACTTAA
LOC_Os03g21530
Os.19112.2.S1_x_at--484--6331Chr03:12282315..12282339 (25 bp)
GATGCAGAATATCCTTTCTTACATT
LOC_Os03g21530
Target Sequence 
GAGTCCTTGCTTGCTAGAACACTGTCCAGACGGAGTGCCAATCTAATGCAACTTGTATATGGCCAAGCTTCAAAGAAGCT
GGATGAAGGAAATGACAGTAGTGCAGAAGAGAGTTCAGATGAAGAATTTTTTGTACCAAAAGGACAAAAGAAGCAAGCAA
AGAATGAATCAACAAGCTTTGATGATATGGATGCTGAGGATTACTCCAAGTTTTTTAAAACTGAGCTAAGAGATTGGTCT
GACGAAGATCTCATCAAGAGCATTCGTGACCGTTTCGTGACTGGAAATTGGTCAAAAGCAGCTCTAAGAGGACAGGAAAT
AAATGAAAACGATGTGGATGACGAAGAAGTCGATGGAGATTTTGAAGATCTGGAGACTGGTGAGGTGCATACAAGCAAGG
CATATGAAAATACTTCAGGAAATGGAGGTACTCACAAGCAAGATGACCTTGCTATGGAAGAAAGAAGACTCAAGAAGCTC
GCACTTAAGGCAAAATTTGATGCAGAATATCCTTTCTTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19112.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis