Browse Element(s) Details


Os.1977.3.S1_x_at

Description gb:NM_184078.1
DB_XREF= gi:34895257
GEN=P0463F06.20
TID=Os.1977.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1977 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0463F06.20), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0260011/11Ser/Thr receptor-like kinase, putative
LOC_Os01g024009/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g025603/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g027301/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1977.3.S1_x_at--828--5073Chr01:865316..865340 (25 bp)
GCACCAAGGGTGCAATCAGCGCATT
LOC_Os01g02600
Os.1977.3.S1_x_at--559--393Chr01:865330..865354 (25 bp)
ATCAGCGCATTCTCCATTTTGACAT
LOC_Os01g02600
Os.1977.3.S1_x_at--470--5673Chr01:865350..865374 (25 bp)
GACATCAAGCCTCACAACATACTGT
LOC_Os01g02600
Os.1977.3.S1_x_at--656--2512Chr01:865365..865389 (25 bp)
AACATACTGTTGGACTACAGCTTCA
LOC_Os01g02600
Os.1977.3.S1_x_at--1079--1392Chr01:865403..865427 (25 bp)
AGACTTTGGGCTTGCCAAGCTATGT
LOC_Os01g02600
Os.1977.3.S1_x_at--161--252Chr01:865523..865547 (25 bp)
ATATAAGTCGGATGTCTACAGCTTT
LOC_Os01g02600
Os.1977.3.S1_x_at--791--2171Chr01:865585..865609 (25 bp)
ACACAGAACCAACCGTTGAGAACCA
LOC_Os01g02600
Os.1977.3.S1_x_at--787--8893Chr01:865613..865637 (25 bp)
TGAGTTCTACTTTCCTGAGTGGATA
LOC_Os01g02600
Os.1977.3.S1_x_at--997--7312Chr01:865668..865692 (25 bp)
GTGCTTACCATGGAGACAACACAAG
LOC_Os01g02600
Os.1977.3.S1_x_at--536--5571Chr01:865701..865725 (25 bp)
GAAATGGTGAGACAGCTAGCTATTG
LOC_Os01g02600
Os.1977.3.S1_x_at--763--1773Chr01:865759..865783 (25 bp)
ACCGGCCCTCAATGACAAAGGTGGT
LOC_Os01g02600
Target Sequence 
GCACCAAGGGTGCAATCAGCGCATTCTCCATTTTGACATCAAGCCTCACAACATACTGTTGGACTACAGCTTCAATCCAA
AGATTTCAGACTTTGGGCTTGCCAAGCTATGTGCAAGAGATCAAAGCATTGTCACATTGACTGCAGCAAGAGGCACAATG
GGCTATATTGCACCAGAACTATATTCTCGGAATTTTGGAGCAATTTCATATAAGTCGGATGTCTACAGCTTTGGCATGCT
GGTGTTAGAAATGGTGAGTGGGAGGAGGAACACAGAACCAACCGTTGAGAACCAAAATGAGTTCTACTTTCCTGAGTGGA
TATATGAGAGAGTTATGAATGGGCAGGACCTGGTGCTTACCATGGAGACAACACAAGGCGAGAAAGAAATGGTGAGACAG
CTAGCTATTGTAGCGTTATGGTGCATTCAGTGGAACCCAAAAAACCGGCCCTCAATGACAAAGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1977.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis