Browse Element(s) Details


Os.19803.5.S1_at

Description gb:CF291303
DB_XREF= gi:33660336
DB_XREF=14ROOT--01-K20.g1
CLONE=14ROOT--01-K20
TID=Os.19803.5
CNT=24
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0009G03.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0590011/11Histone H2B.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19803.5.S1_at--1116--1751Chr01:2817024..2817048 (25 bp)
ACCTCCGCTTAGATTCCATCTATTG
LOC_Os01g05900
Os.19803.5.S1_at--449--3691Chr01:2817005..2817029 (25 bp)
CTATTGGTAGTATTTAGTTCTGTCT
LOC_Os01g05900
Os.19803.5.S1_at--264--1231Chr01:2816990..2817014 (25 bp)
AGTTCTGTCTACTATCTGGTAGTGG
LOC_Os01g05900
Os.19803.5.S1_at--39--5591Chr01:2816963..2816987 (25 bp)
GAAATGGATGTCTTATTAGTGTGTA
LOC_Os01g05900
Os.19803.5.S1_at--165--10411Chr01:2816951..2816975 (25 bp)
TTATTAGTGTGTAGTTGGCGGTTGT
LOC_Os01g05900
Os.19803.5.S1_at--275--6631Chr01:2816931..2816955 (25 bp)
GTTGTGGCGCTGCTTTTGGTAAACT
LOC_Os01g05900
Os.19803.5.S1_at--381--4771Chr01:2816923..2816947 (25 bp)
GCTGCTTTTGGTAAACTGTTGCTTA
LOC_Os01g05900
Os.19803.5.S1_at--130--2571Chr01:2816910..2816934 (25 bp)
AACTGTTGCTTATTTATCTGAGATA
LOC_Os01g05900
Os.19803.5.S1_at--354--6511Chr01:2816889..2816913 (25 bp)
GATATTAACGATGCTCTTCTAGACT
LOC_Os01g05900
Os.19803.5.S1_at--183--4831Chr01:2816877..2816901 (25 bp)
GCTCTTCTAGACTTCTATGTGCTTC
LOC_Os01g05900
Os.19803.5.S1_at--978--1391Chr01:2816869..2816893 (25 bp)
AGACTTCTATGTGCTTCCTGTTTTG
LOC_Os01g05900
Target Sequence 
ACCTCCGCTTAGATTCCATCTATTGGTAGTATTTAGTTCTGTCTACTATCTGGTAGTGGTAGAAATGGATGTCTTATTAG
TGTGTAGTTGGCGGTTGTGGCGCTGCTTTTGGTAAACTGTTGCTTATTTATCTGAGATATTAACGATGCTCTTCTAGACT
TCTATGTGCTTCCTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19803.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis