Browse Element(s) Details


Os.19952.1.S1_at

Description gb:AK100314.1
DB_XREF= gi:32985523
TID=Os.19952.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710E05.9 (P0710E05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078N13, full insert sequence.
FL= gb:AK100314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0945011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19952.1.S1_at--640--5751Chr01:4815039..4815143 (25 bp)
GACGTTCCCTGGCAGATGTTCATCG
LOC_Os01g09450
Os.19952.1.S1_at--148--1611Chr01:4815304..4815328 (25 bp)
AGCTGACAGCTGAACTAATCACTGT
LOC_Os01g09450
Os.19952.1.S1_at--973--7471Chr01:4815370..4815394 (25 bp)
GTGTGGTGCTTGGATTGAGATCCCT
LOC_Os01g09450
Os.19952.1.S1_at--370--9031Chr01:4815396..4815420 (25 bp)
TGCAGTCAAATACACGGTCCTTTGT
LOC_Os01g09450
Os.19952.1.S1_at--931--9851Chr01:4815406..4815430 (25 bp)
TACACGGTCCTTTGTCATTGACAGG
LOC_Os01g09450
Os.19952.1.S1_at--179--7931Chr01:4815440..4815464 (25 bp)
GGATTATCGGGCCTATATGTTAATG
LOC_Os01g09450
Os.19952.1.S1_at--239--10271Chr01:4815496..4815520 (25 bp)
TTTGATCTGTGGTGCTTGGCTTTAT
LOC_Os01g09450
Os.19952.1.S1_at--116--8311Chr01:4815513..4815537 (25 bp)
GGCTTTATGGCCATTTTGATGTCTT
LOC_Os01g09450
Os.19952.1.S1_at--466--3591Chr01:4815524..4815548 (25 bp)
CATTTTGATGTCTTTGGGCTGCATA
LOC_Os01g09450
Os.19952.1.S1_at--523--4051Chr01:4815605..4815629 (25 bp)
CGATCGAGTAGCATGGAACAGTGTT
LOC_Os01g09450
Os.19952.1.S1_at--197--6271Chr01:4815691..4815715 (25 bp)
GATGTAGGCAGGCATGTGTCAAATT
LOC_Os01g09450
Target Sequence 
GACGTTCCCTGGCAGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTGCCGCCGCCGTCGCT
GATGAGGGCGGCAGGGAGCAGGAAGAGGGCAGCAGCTGACAGCTGAACTAATCACTGTCAATTTCAGNTNCTGCTGCCGA
TGATGATGAATTGATCATGGTGTGGTGCTTGGATTGAGATCCCTNTGCAGTCAAATACACGGTCCTTTGTCATTGACAGG
TGGNCCTAGGGATTATCGGGCCTATATGTTAATGATAACGTCACNTGANTTTAACTGCAGAGGATTTTGATCTGTGGTGC
TTGGCTTTATGGCCATTTTGATGTCTTTGGGCTGCATAATTATATGTATACTTACGAGAGATCATGACGGTATTAGTGGT
CATGATTAGTAGTACGATCGAGTAGCATGGAACAGTGTTGTTAATTACTAGTAGCTGGGTGATTAAGCTAATCTATGGCN
CCTTTGGTGGTGTAATTTTGGATGTAGGCAGGCATGTGTCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis