Browse Element(s) Details


Os.19956.1.S1_at

Description gb:BI801365
DB_XREF= gi:16574069
DB_XREF=H047F09
CLONE=H047F09
TID=Os.19956.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19956 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173539.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1206010/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19956.1.S1_at--677--3291Chr06:6463135..6463159 (25 bp)
CACAGCTGCATTGAGCGAGAAGAAG
LOC_Os06g12060
Os.19956.1.S1_at--216--1211Chr06:6463112..6463136 (25 bp)
AGTTTGTCAACAAGTTTGTGCATCC
LOC_Os06g12060
Os.19956.1.S1_at--923--631Chr06:6463058..6463082 (25 bp)
ATGCTTATGCCTCCGGTTGTTCTGA
LOC_Os06g12060
Os.19956.1.S1_at--787--10431Chr06:6463054..6463078 (25 bp)
TTATGCCTCCGGTTGTTCTGAGGAA
LOC_Os06g12060
Os.19956.1.S1_at--45--8051Chr06:6463023..6463047 (25 bp)
GGAGTTGCTTCATTGCTTAGCCTGC
LOC_Os06g12060
Os.19956.1.S1_at--817--3051Chr06:6462763..6462787 (25 bp)
AATCTTCAGATCAGGAAATTTCCTT
LOC_Os06g12060
Os.19956.1.S1_at--823--5231Chr06:6462728..6462752 (25 bp)
GAATAGCTCACATACCATTTGACTG
LOC_Os06g12060
Os.19956.1.S1_at--989--2731NONE
AAGAACGCAGATGTGGAATTTAGCA
NONE
Os.19956.1.S1_at--300--7491Chr06:6462685..6462709 (25 bp)
GTGGAATTTAGCACATGACTAGAAT
LOC_Os06g12060
Os.19956.1.S1_at--206--3271Chr06:6462576..6462600 (25 bp)
CAACTATGACAGGAACGTGCTCAGA
LOC_Os06g12060
Os.19956.1.S1_at--86--3491Chr06:6462567..6462591 (25 bp)
CAGGAACGTGCTCAGAATATAATCT
LOC_Os06g12060
Target Sequence 
CACAGCTGCATTGAGCGAGAAGAAGTTTGTCAACAAGTTTGTGCATCCTTATGAGGACCANCATNGCNAGNCCTTGCTGA
TGCTTATGCCTCCGGTTGTTCTGAGGAANGAAATGGAGTTGCTTCATTGCTTAGCCTGCNAGACTGAAATGGATGGTGNT
TNAAGNTTTATGCTGGGAAATCTNGCTAGATTGTTGCACTGNTNNGNANANTNNNAANGNNNNNNANNNTNNNNNTNNNN
NAAAAAGAAGNNNCTTGTGGTATTGGNCTGAAATCTTCAGATCAGGAAATTTCCTTGGAAAAAAATGAATAGCTCACATA
CCATTTGACTGAAAATATAGAAGAACGCAGATGTGGAATTTAGCACATGACTAGAATATTTCTATAGATCNAGTGTTTCA
AANTGGATAGGAAATGGNCNANGTTNAGGAGTACCTAACANCANTCCACCTGAGATTTGNCTGCAACTATGACAGGAACG
TGCTCAGAATATAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis