Browse Element(s) Details

Os.20157.1.A1_at

Description

gb:CR288123
DB_XREF= gi:44674689
DB_XREF=CR288123
CLONE=y698f12p3
TID=Os.20157.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20157 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194145.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04169	10/11	hydrolase, alpha/beta fold family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04100	NA	NA	6	+	1709906..1712529	hypothetical protein
LOC_Os06g04110	Os.2741.4.S1_x_at	2/11	6	+	1714409..1716222	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120	OsAffx.27450.1.S1_at	11/11	6	+	1722576..1724393	hypothetical protein
LOC_Os06g04130	Os.4314.1.S1_at	11/11	6	+	1724389..1728997	Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130	OsAffx.20617.1.A1_x_at	1/11	6	+	1724389..1728997	Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140	Os.55325.1.S1_at	11/11	6	+	1730822..1731566	expressed protein
LOC_Os06g04150	Os.50876.1.S1_at	11/11	6	+	1732989..1734108	Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150	OsAffx.10296.1.S1_at	1/11	6	+	1732989..1734108	Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169	OsAffx.15255.1.S1_x_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	OsAffx.15254.1.S1_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	Os.20157.1.A1_at	10/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190	Os.51161.2.S1_x_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.2.S1_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.1.S1_at	9/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016787	molecular_function	hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20157.1.A1_at--685--547	1	Chr06:1736229..1736253 (25 bp)	GAACTCGCAATAACGATCGACTGCC	LOC_Os06g04169
Os.20157.1.A1_at--64--639	1	Chr06:1736215..1736239 (25 bp)	GATCGACTGCCCTGCATGAAGAAGA	LOC_Os06g04169
Os.20157.1.A1_at--130--635	1	Chr06:1736179..1736203 (25 bp)	GATGCTGCCCTATTTTAGGATGAGC	LOC_Os06g04169
Os.20157.1.A1_at--329--23	1	Chr06:1736046..1736070 (25 bp)	ATATATAGTCGTTTCCCTTCATTCC	LOC_Os06g04169
Os.20157.1.A1_at--548--655	1	Chr06:1735978..1736002 (25 bp)	GATTATACAGCTCTTTCTTCTCTGT	LOC_Os06g04169
Os.20157.1.A1_at--993--999	1	Chr06:1735912..1735936 (25 bp)	TAGCTCCACTATATACTGTCAGAAC	LOC_Os06g04169
Os.20157.1.A1_at--345--37	1	Chr06:1735881..1735905 (25 bp)	ATAATATGGACGTCGAGGCAGAATT	LOC_Os06g04169
Os.20157.1.A1_at--1047--765	1	NONE	GGGATGTTAAATTTCTCGCATATAA	NONE
Os.20157.1.A1_at--1078--1073	1	Chr06:1735802..1735826 (25 bp)	TTGCATGGCTTGTGACAGGCACGAT	LOC_Os06g04169
Os.20157.1.A1_at--296--823	1	Chr06:1735785..1735809 (25 bp)	GGCACGATTTGCTTGATTCGGGCCC	LOC_Os06g04169
Os.20157.1.A1_at--488--943	1	Chr06:1735768..1735792 (25 bp)	TCGGGCCCTGCTTCCAATTAATTTT	LOC_Os06g04169

Target Sequence

GAACTCGCAATAACGATCGACTGCCCTGCATGAAGAAGAAGAATTAAGAAGATGCTGCCCTATTTTAGGATGAGCAATAT
ATTCTACCATATAAATTAAATATATATATTTTCTTTCTTTCTTTTCTTTTCTTGAAGGGAAACAATATCCATATATTTGC
AGGAGTAATTAAATACATACANNATATATAGTCGTTTCCCTTCATTCCTTCTTCTTCTTCTTCTCTTGTAGTGGAGTATA
AAGTGTACTTTGATTATACAGCTCTTTCTTCTCTGTANTTTATTGCATGANTGGGACCAACTTGGACGGTACTCCNNGNT
AGCTCCACTATATACTGTCAGAACTGTAATATAATATGGACGTCGAGGCAGAATTAATTAAGCTGCAGAAGTTGGTTTCT
GATGGGGATGTTAAATTTCTCGCATATAATTGCATGGCTTGTGACAGGCACGATTTGCTTGATTCGGGCCCTGCTTCCAA
TTAATTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis