Browse Element(s) Details


Os.20341.1.S1_s_at

Description gb:AK104942.1
DB_XREF= gi:32990151
TID=Os.20341.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence.
FL= gb:AK104942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5204011/11Serine carboxypeptidase family protein, expressed
LOC_Os06g327401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g520701/11Serine carboxypeptidase family protein, expressed
LOC_Os03g520801/11Serine carboxypeptidase family protein, expressed
LOC_Os12g391701/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20341.1.S1_s_at--827--1871Chr03:29810993..29811017 (25 bp)
ACGAGGAGACGGGCACTGAGCTCTT
LOC_Os03g52040
Os.20341.1.S1_s_at--886--8915Chr06:19038753..19038777 (25 bp)
TGAGCTCTTCTACTACTTCGTTGAA
LOC_Os06g32740
Os.20341.1.S1_s_at--433--10572Chr03:29833757..29833781 (25 bp)
TTCTACTACTTCGTTGAATCGGAGA
LOC_Os03g52080
Os.20341.1.S1_s_at--1143--2051Chr03:29811023..29811047 (25 bp)
ACTTCGTTGAATCGGAGAGGAGCCC
LOC_Os03g52040
Os.20341.1.S1_s_at--440--1311Chr03:29811038..29811062 (25 bp)
AGAGGAGCCCAAGTACAGGCCCTGT
LOC_Os03g52040
Os.20341.1.S1_s_at--1063--8071Chr03:29811041..29811065 (25 bp)
GGAGCCCAAGTACAGGCCCTGTGAT
LOC_Os03g52040
Os.20341.1.S1_s_at--529--1631Chr03:29811103..29811127 (25 bp)
AGCGGTGTCGTCTTTGAAGTAGGTT
LOC_Os03g52040
Os.20341.1.S1_s_at--380--5471Chr03:29811170..29811194 (25 bp)
GAACTGACAGAGACTATGCTTTCAT
LOC_Os03g52040
Os.20341.1.S1_s_at--529--5991Chr03:29811179..29811203 (25 bp)
GAGACTATGCTTTCATTGCTCTAAG
LOC_Os03g52040
Os.20341.1.S1_s_at--291--4891Chr03:29811187..29811211 (25 bp)
GCTTTCATTGCTCTAAGGTTAATAC
LOC_Os03g52040
Os.20341.1.S1_s_at--141--6771Chr03:29811204..29811228 (25 bp)
GTTAATACTATTCTCATGTTGGCTC
LOC_Os03g52040
Target Sequence 
ACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGG
TTGACAGGCGGGCCTGGCTGCTCCGGATTCAGCGGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTTGATGA
TGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTAATACTATTCTCATGTTGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20341.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis