Browse Element(s) Details


Os.20712.1.A1_at

Description gb:CB629272
DB_XREF= gi:29624261
DB_XREF=OSIIEb05F23.r
CLONE=OSIIEb05F23
TID=Os.20712.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20712 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180145.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5404010/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20712.1.A1_at--744--1491Chr01:31410579..31411010 (25 bp)
AGCACACTAGTATTCTGATTAACAG
LOC_Os01g54040
Os.20712.1.A1_at--563--451Chr01:31410956..31410980 (25 bp)
ATCTAAGTCATGATTCAGTTCTCTG
LOC_Os01g54040
Os.20712.1.A1_at--287--9651Chr01:31410942..31410966 (25 bp)
TCAGTTCTCTGAATCATTATGTAAA
LOC_Os01g54040
Os.20712.1.A1_at--640--1071Chr01:31410911..31410935 (25 bp)
AGGGACATGTTCTTTTAATCGCTTC
LOC_Os01g54040
Os.20712.1.A1_at--683--8791Chr01:31410904..31410928 (25 bp)
TGTTCTTTTAATCGCTTCTTCTCTA
LOC_Os01g54040
Os.20712.1.A1_at--641--10551Chr01:31410889..31410913 (25 bp)
TTCTTCTCTACCTCTAAAGGGCTGG
LOC_Os01g54040
Os.20712.1.A1_at--816--2311Chr01:31410874..31410898 (25 bp)
AAAGGGCTGGATCTCACTGGTTGAT
LOC_Os01g54040
Os.20712.1.A1_at--319--7971Chr01:31410866..31410890 (25 bp)
GGATCTCACTGGTTGATTTAAACTG
LOC_Os01g54040
Os.20712.1.A1_at--1030--2131NONE
ACAGAACTTGTTGGAATACTTTCAA
NONE
Os.20712.1.A1_at--756--2451Chr01:31410791..31410815 (25 bp)
AACAATTCCATTTCTTGTCGCAGGC
LOC_Os01g54040
Os.20712.1.A1_at--149--9591Chr01:31410779..31410803 (25 bp)
TCTTGTCGCAGGCTCTTATCTCAAG
LOC_Os01g54040
Target Sequence 
AGCACACTAGTATTCTGATTAACAGGTGATATCTAAGTCATGATTCAGTTCTCTGAATCATTATGTAAATGACAAAGGGA
CATGTTCTTTTAATCGCTTCTTCTCTACCTCTAAAGGGCTGGATCTCACTGGTTGATTTAAACTGGATTTGTAACAGAAC
TTGTTGGAATACTTTCAAGTTTTGACTAATATGGCAACAATTCCATTTCTTGTCGCAGGCTCTTATCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20712.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis