Browse Element(s) Details


Os.20712.2.A1_at

Description gb:CB621201
DB_XREF= gi:29616189
DB_XREF=OSIIEa06O19.r
CLONE=OSIIEa06O19
TID=Os.20712.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20712 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180145.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g540407/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20712.2.A1_at--695--1831NONE
ACTGAACCTTAACAGGCAAATATGT
NONE
Os.20712.2.A1_at--292--8231Chr01:31408023..31408047 (25 bp)
GGCAAATATGTACAAGCACAGTTCA
LOC_Os01g54040
Os.20712.2.A1_at--962--7031Chr01:31408014..31408038 (25 bp)
GTACAAGCACAGTTCAGGGATAAAA
LOC_Os01g54040
Os.20712.2.A1_at--906--7931Chr01:31407997..31408021 (25 bp)
GGATAAAATGCTACTGCCGTACGAT
LOC_Os01g54040
Os.20712.2.A1_at--1008--1971Chr01:31407985..31408009 (25 bp)
ACTGCCGTACGATATAGGTCCAACC
LOC_Os01g54040
Os.20712.2.A1_at--553--6971Chr01:31407979..31408003 (25 bp)
GTACGATATAGGTCCAACCGCAAAT
LOC_Os01g54040
Os.20712.2.A1_at--560--7791Chr01:31407969..31407993 (25 bp)
GGTCCAACCGCAAATTATTACTGTA
LOC_Os01g54040
Os.20712.2.A1_at--1034--331NONE
ATACAAGAAAGCATGCTGTAGCCAA
NONE
Os.20712.2.A1_at--99--4991Chr01:31407934..31407958 (25 bp)
GCATGCTGTAGCCAAATGAAGCTGT
LOC_Os01g54040
Os.20712.2.A1_at--105--4391NONE
GCCAAATGAAGCTGTACACTAAGTT
NONE
Os.20712.2.A1_at--549--7011NONE
GTACACTAAGTTATGACAGGAATGT
NONE
Target Sequence 
ACTGAACCTTAACAGGCAAATATGTACAAGCACAGTTCAGGGATAAAATGCTACTGCCGTACGATATAGGTCCAACCGCA
AATTATTACTGTAATACAAGAAAGCATGCTGTAGCCAAATGAAGCTGTACACTAAGTTATGACAGGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20712.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis