Browse Element(s) Details


Os.20829.1.S1_at

Description gb:CB621198
DB_XREF= gi:29616186
DB_XREF=OSIIEa06O18.f
CLONE=OSIIEa06O18
TID=Os.20829.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20829 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_173025.1 (A.thaliana) PRLI-interacting factor L, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5563011/11CobW/P47K family protein, expressed
LOC_Os02g534501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein
LOC_Os02g55610NANA2+34052272..34053164serine-rich protein, putative, expressed
LOC_Os02g55620OsAffx.12656.1.S1_at11/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55620OsAffx.12656.2.S1_at4/112+34058572..34061363hAT family dimerisation domain containing protein
LOC_Os02g55630Os.20829.1.S1_at11/112+34065186..34069609CobW/P47K family protein, expressed
LOC_Os02g55640Os.13582.1.S1_at10/112+34069969..34072290Proteasome maturation factor UMP1 family protein, expressed
LOC_Os02g55649Os.12270.1.S1_at11/112+34075906..34076612expressed protein
LOC_Os02g55658Os.12270.1.S1_at11/112+34078499..34079116expressed protein
LOC_Os02g55670Os.28065.1.S1_x_at10/112+34084041..34085489expressed protein
LOC_Os02g55670Os.28065.2.S1_at9/112+34084041..34085489expressed protein
LOC_Os02g55680Os.7287.1.S1_s_at10/112+34088042..34095412Cyclin, N-terminal domain containing protein
LOC_Os02g55680Os.7287.1.S1_x_at5/112+34088042..34095412Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20829.1.S1_at--1133--8552Chr02:34068973..34068997 (25 bp)
TGGTTGGGAAACCTACTGCTAGAAC
LOC_Os02g55630
Os.20829.1.S1_at--62--9651Chr02:34069037..34069061 (25 bp)
TCAGTGGAATGCCTCAGCGCTTTGT
LOC_Os02g55630
Os.20829.1.S1_at--583--1651Chr02:34069052..34069213 (25 bp)
AGCGCTTTGTCTTTCAGGGAGTGCA
LOC_Os02g55630
Os.20829.1.S1_at--343--6111Chr02:34069207..34069231 (25 bp)
GAGTGCACGACATTTTCCAGGGATC
LOC_Os02g55630
Os.20829.1.S1_at--698--9931Chr02:34069366..34069390 (25 bp)
TACGTTTTTCCTACACACGGGATGG
LOC_Os02g55630
Os.20829.1.S1_at--991--10531Chr02:34069402..34069426 (25 bp)
TTCATGATTTTGAGCTTTGCGGCTG
LOC_Os02g55630
Os.20829.1.S1_at--785--10251Chr02:34069417..34069441 (25 bp)
TTTGCGGCTGTAGAACTTATCCTTG
LOC_Os02g55630
Os.20829.1.S1_at--833--5471Chr02:34069462..34069486 (25 bp)
GAACTAACTTGCATCATTTGCGAGA
LOC_Os02g55630
Os.20829.1.S1_at--551--7051Chr02:34069499..34069523 (25 bp)
GTAACCGTAATATCCTTGTAGCCTT
LOC_Os02g55630
Os.20829.1.S1_at--512--1691Chr02:34069518..34069542 (25 bp)
AGCCTTGCCATCATTTACAGTTACG
LOC_Os02g55630
Os.20829.1.S1_at--109--5211Chr02:34069542..34069566 (25 bp)
GAATTGTACCCTGAAATTGCGCACG
LOC_Os02g55630
Target Sequence 
TGGTTGGGAAACCTACTGCTAGAACGCAGNGATGACATATACCGGATGAAGGGGNTACTTTCTGTCAGTGGAATGCCTCA
GCGCTTTGTCTTTCAGGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATNTGGGAACCAAATGAGCCACGCATCA
ACAAGATTGTATTCATAGGCAAGAATCTCAATGGGGAAGAACTGGAGAAGGGCTTCAAGGATTGCNTNCTGAAGAAATAA
GCGAGAAANGAGTTTNTACGTTTTTCCTACACACGGGATGGGAATCTCCAGNTTCATGATTTTGAGCTTTGCGGCTGTAG
AACTTATCCTTGAATCTGAAGTGCGATTGAATGAACTAACTTGCATCATTTGCGAGATGTACAGAATGGGTAACCGTAAT
ATCCTTGTAGCCTTGCCATCATTTACAGTTACGAATTGTACCCTGAAATTGCGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis