Browse Element(s) Details


Os.21880.1.S1_at

Description gb:AK102463.1
DB_XREF= gi:32987672
TID=Os.21880.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094D16, full insert sequence.
FL= gb:AK102463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4994011/11ferredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21880.1.S1_at--642--2451Chr04:29569751..29569775 (25 bp)
AACAAGACCATCTCAGACCATATTG
LOC_Os04g49940
Os.21880.1.S1_at--102--5851Chr04:29569756..29569780 (25 bp)
GACCATCTCAGACCATATTGTACAT
LOC_Os04g49940
Os.21880.1.S1_at--767--451Chr04:29569760..29569784 (25 bp)
ATCTCAGACCATATTGTACATTAAG
LOC_Os04g49940
Os.21880.1.S1_at--221--3431Chr04:29569764..29569788 (25 bp)
CAGACCATATTGTACATTAAGAATT
LOC_Os04g49940
Os.21880.1.S1_at--46--5211Chr04:29569784..29569808 (25 bp)
GAATTGTCATTTGTTAACTTTTGAC
LOC_Os04g49940
Os.21880.1.S1_at--376--2491Chr04:29569799..29569823 (25 bp)
AACTTTTGACATGTTTATACACCAA
LOC_Os04g49940
Os.21880.1.S1_at--199--5671Chr04:29569806..29569830 (25 bp)
GACATGTTTATACACCAATCCTGAT
LOC_Os04g49940
Os.21880.1.S1_at--1058--8771Chr04:29569810..29569834 (25 bp)
TGTTTATACACCAATCCTGATATCT
LOC_Os04g49940
Os.21880.1.S1_at--160--4391Chr04:29569820..29569844 (25 bp)
CCAATCCTGATATCTTCACTGCAAG
LOC_Os04g49940
Os.21880.1.S1_at--270--9571Chr04:29569832..29569856 (25 bp)
TCTTCACTGCAAGTATGATGCAGTC
LOC_Os04g49940
Os.21880.1.S1_at--1084--5131Chr04:29569840..29569864 (25 bp)
GCAAGTATGATGCAGTCAAATATTA
LOC_Os04g49940
Target Sequence 
AACAAGACCATCTCAGACCATATTGTACATTAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGAT
ATCTTCACTGCAAGTATGATGCAGTCAAATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis