Browse Element(s) Details


Os.21888.1.S1_at

Description gb:AK064640.1
DB_XREF= gi:32974658
TID=Os.21888.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B04, full insert sequence.
FL= gb:AK064640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0591010/11Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006744biological_processubiquinone biosynthesis
GO:0005740cellular_componentmitochondrial envelope
GO:0004395molecular_functionhexaprenyldihydroxybenzoate methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21888.1.S1_at--1155--7551Chr06:2707630..2707654 (25 bp)
GGGCCTTTGTGATTTCTACAATCAA
LOC_Os06g05910
Os.21888.1.S1_at--735--5151NONE
GCAACTATGATATTTTCCACTGGAT
NONE
Os.21888.1.S1_at--521--9231Chr06:2708119..2708143 (25 bp)
TCCTAAAGGCACACACCATTGGTCA
LOC_Os06g05910
Os.21888.1.S1_at--897--6771Chr06:2708150..2708174 (25 bp)
GTTACCCCTGATGAGCTAGTGCAAA
LOC_Os06g05910
Os.21888.1.S1_at--37--8171Chr06:2708179..2708200 (22 bp)
GGAAAAAGCCTCAATCTATGTACAA
LOC_Os06g05910
Os.21888.1.S1_at--971--571Chr06:2708300..2708324 (25 bp)
ATCCATGGCGTGGAGATTTTTCCAT
LOC_Os06g05910
Os.21888.1.S1_at--777--6151Chr06:2708371..2708395 (25 bp)
GTTGAAACACCCTCAGTAGTGTCAC
LOC_Os06g05910
Os.21888.1.S1_at--440--6931Chr06:2708386..2708410 (25 bp)
GTAGTGTCACAAACTCAAGCTTAGC
LOC_Os06g05910
Os.21888.1.S1_at--414--2711Chr06:2708402..2708426 (25 bp)
AAGCTTAGCACACTGTTAGTACAAA
LOC_Os06g05910
Os.21888.1.S1_at--612--4871Chr06:2708492..2708516 (25 bp)
GCTATTTGTATGTTTTTGTGCGGAC
LOC_Os06g05910
Os.21888.1.S1_at--484--6651Chr06:2708642..2708666 (25 bp)
GTTGAGTACTCTCTCTTTGTATTAA
LOC_Os06g05910
Target Sequence 
GGGCCTTTGTGATTTCTACAATCAACCGCTCAATAAGAGCATTTGCAACTATGATATTTTCCACTGGATTCCTAAAGGCA
CACACCATTGGTCAAAATTAGTTACCCCTGATGAGCTAGTGCAAATGCTGGAAAAAGCCTCAATCTATGTACAAGAAATG
GCAGGGATTGGTTATAATCCATGGCGTGGAGATTTTTCCATGTCAAAGGATACTAGTGTGGATTATTTTGCTTATGGCAT
AAAGAAAGTTGAAACACCCTCAGTAGTGTCACAAACTCAAGCTTAGCACACTGTTAGTACAAAGGGGAAAAAAAGAGATG
ATCCTGAATCATCGGGATCAGGATAATTCTGTTGCAAGAAAAACATGTGCTATTTGTATGTTTTTGTGCGGACTACAATC
AGATAGCAAAGTACAGTGTACGTGTGTAGTGTACACACTGTAGTGGTGTGTGCATATATATCTTCCATGTAATAAAACAA
ATAGCAAATTTAAAAGCTTTTTTTTTCATATACTATCTGTTGAGTACTCTCTCTTTGTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis