Browse Element(s) Details


Os.22086.1.S1_at

Description gb:AF014467.1
DB_XREF= gi:2429285
GEN=POX22.3
TID=Os.22086.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.22086 (NCBI UniGene Cluster)
DEF=Oryza sativa peroxidase (POX22.3) mRNA, complete cds.
PROD=peroxidase
FL= gb:AK073202.1 gb:AK104710.1 gb:AF014467.1 gb:AK122028.1 gb:AK099382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4802011/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47960OsAffx.28948.1.S1_at11/117+28648014..28649925expressed protein
LOC_Os07g47960Os.19277.1.S1_at1/117+28648014..28649925expressed protein
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein
LOC_Os07g47979NANA7+28655026..28655250NA
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22086.1.S1_at--383--1171Chr07:28673388..28673412 (25 bp)
AGTATGACGGGATGCGTTCGTTGCT
LOC_Os07g48020
Os.22086.1.S1_at--89--7991Chr07:28673397..28673421 (25 bp)
GGATGCGTTCGTTGCTGGAAGCAAA
LOC_Os07g48020
Os.22086.1.S1_at--220--9131Chr07:28673409..28673433 (25 bp)
TGCTGGAAGCAAATCGTGTCGACGA
LOC_Os07g48020
Os.22086.1.S1_at--44--7231Chr07:28673426..28673450 (25 bp)
GTCGACGACGACATAAACGGGCCAC
LOC_Os07g48020
Os.22086.1.S1_at--549--2071Chr07:28673436..28673460 (25 bp)
ACATAAACGGGCCACACCACATATA
LOC_Os07g48020
Os.22086.1.S1_at--1151--8431Chr07:28673445..28673469 (25 bp)
GGCCACACCACATATACCCATATAT
LOC_Os07g48020
Os.22086.1.S1_at--1014--9951Chr07:28673459..28673483 (25 bp)
TACCCATATATGTAGTATAACCACA
LOC_Os07g48020
Os.22086.1.S1_at--705--6791Chr07:28673473..28673497 (25 bp)
GTATAACCACAAGTATAGGTACGGT
LOC_Os07g48020
Os.22086.1.S1_at--354--6991Chr07:28673491..28673515 (25 bp)
GTACGGTGGTGTTGTACTAGTACAC
LOC_Os07g48020
Os.22086.1.S1_at--94--9851Chr07:28673517..28673541 (25 bp)
TAAAGTATATGGCAGCCAGCTCGCT
LOC_Os07g48020
Os.22086.1.S1_at--934--3791Chr07:28673536..28673560 (25 bp)
CTCGCTCTAGCAATCCATCAAGTGT
LOC_Os07g48020
Target Sequence 
AGTATGACGGGATGCGTTCGTTGCTGGAAGCAAATCGTGTCGACGACGACATAAACGGGCCACACCACATATACCCATAT
ATGTAGTATAACCACAAGTATAGGTACGGTGGTGTTGTACTAGTACACGTAAAGTATATGGCAGCCAGCTCGCTCTAGCA
ATCCATCAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis