Browse Element(s) Details


Os.2213.2.S1_x_at

Description gb:NM_189857.1
DB_XREF= gi:34906797
GEN=P0594D10.12
TID=Os.2213.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to GTP-binding protein (P0594D10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) similar to GTP-binding protein (P0594D10.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4282011/11small GTP-binding protein domain containing protein, expressed
LOC_Os03g274501/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2213.2.S1_x_at--997--8331Chr07:25646229..25646604 (25 bp)
GGCTGGGAAGACGACCTTGCTAGAA
LOC_Os07g42820
Os.2213.2.S1_x_at--416--2951Chr07:25646176..25646200 (25 bp)
AAGGCCTTCCACATGATCGTATCGT
LOC_Os07g42820
Os.2213.2.S1_x_at--684--6391Chr07:25646162..25646186 (25 bp)
GATCGTATCGTTCCAACAGTTGGGC
LOC_Os07g42820
Os.2213.2.S1_x_at--1092--2391Chr07:25646105..25646129 (25 bp)
AAACTTGTTTTCTGGGATCTGGGAG
LOC_Os07g42820
Os.2213.2.S1_x_at--830--4471Chr07:25645927..25645951 (25 bp)
GCCTGGCCTACGAACAATCTGGGAG
LOC_Os07g42820
Os.2213.2.S1_x_at--379--271Chr07:25645873..25645897 (25 bp)
ATATGTTATTGACTCTGCTGCTGCA
LOC_Os07g42820
Os.2213.2.S1_x_at--352--5352Chr03:15728516..15728535 (20 bp)
GAAGATGCCAAATCTGCTCTGGAGA
LOC_Os03g27450
Os.2213.2.S1_x_at--420--2831Chr07:25645666..25645690 (25 bp)
AAGTTCTTCATCACGAGGATCTGCA
LOC_Os07g42820
Os.2213.2.S1_x_at--731--8031Chr07:25645640..25645664 (25 bp)
GGAGTGCCTCTACTCATATTTGCAA
LOC_Os07g42820
Os.2213.2.S1_x_at--1028--8431Chr07:25645023..25645047 (25 bp)
GGCCATATATGTTCCAGGCTGGATC
LOC_Os07g42820
Os.2213.2.S1_x_at--1085--4871Chr07:25644492..25644516 (25 bp)
GCTTTGCAGCTGTACACTTGGGTAG
LOC_Os07g42820
Target Sequence 
GGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGGAAGGCCTTCCACATGATCGTATCGTTC
CAACAGTTGGGCTTAATATTGGACGTATTGAAGATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGC
CTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCATCATCATT
TGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAGGAGTGCCTCTACTCATATTTGCAAACA
AGCAGGAGTTACCAGCAGCTGTGACAGAGGAAGAGCTGGCTAGGCATCTTCACCTTAAAGGGTTAGACGAGAGGCCATAT
ATGTTCCAGGCTGGATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAG
TAAACGCACCGAGGTGCTGATGGCGCGCTTTGCAGCTGTACACTTGGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2213.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis