Browse Element(s) Details


Os.22373.1.S1_at

Description gb:AJ495800.1
DB_XREF= gi:27125822
TID=Os.22373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for MYB31 protein
DEF=Oryza sativa (japonica cultivar-group) partial mRNA for MYB31 protein.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1286011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22373.1.S1_at--741--6091Chr01:7120444..7120468 (25 bp)
GAGTCCTGGATTTCGAGTGTACCAC
LOC_Os01g12860
Os.22373.1.S1_at--629--1111Chr01:7120459..7120483 (25 bp)
AGTGTACCACACCTGAAAGATCATC
LOC_Os01g12860
Os.22373.1.S1_at--603--2811Chr01:7120511..7120535 (25 bp)
AAGATATCTGAGCTCACCTATTCCT
LOC_Os01g12860
Os.22373.1.S1_at--478--8211Chr01:7120583..7120607 (25 bp)
GGAATACACCTCAGACTTGCTGTAA
LOC_Os01g12860
Os.22373.1.S1_at--945--2791Chr01:7120647..7120671 (25 bp)
AAGATGCTTCTTGTGACTTGCTCTC
LOC_Os01g12860
Os.22373.1.S1_at--156--10731Chr01:7120664..7120688 (25 bp)
TTGCTCTCGACCTTACAATTTCAGC
LOC_Os01g12860
Os.22373.1.S1_at--151--5411Chr01:7120692..7120716 (25 bp)
GAAGCTACATTATTCCGCTCTATGA
LOC_Os01g12860
Os.22373.1.S1_at--1037--4111Chr01:7120707..7120731 (25 bp)
CGCTCTATGATCACACTTCTGGTAG
LOC_Os01g12860
Os.22373.1.S1_at--1037--2231Chr01:7120775..7120799 (25 bp)
AAATTCTTCAAGTTTATGCCTGTTA
LOC_Os01g12860
Os.22373.1.S1_at--940--6791Chr01:7120796..7120820 (25 bp)
GTTATACTCAAATCCTACACCTAGA
LOC_Os01g12860
Os.22373.1.S1_at--798--9851Chr01:7120811..7120835 (25 bp)
TACACCTAGATTTTCATTTTCAGCT
LOC_Os01g12860
Target Sequence 
GAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGC
TCACCTATTCCTTCGTCCCATCTTCTGAAAAGTTTTAGATAGCTTGATATACCATGTGAGGAATACACCTCAGACTTGCT
GTAACAATCATTATGCGAACGATCTTGTTCATTACCGTAAAAAAAGATGCTTCTTGTGACTTGCTCTCGACCTTACAATT
TCAGCCCAGAAGCTACATTATTCCGCTCTATGATCACACTTCTGGTAGTACTAGAATATCTGATAATGGTATAAGTTTAC
CTGGCTATTAGAAATTCTTCAAGTTTATGCCTGTTATACTCAAATCCTACACCTAGATTTTCATTTTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis