Browse Element(s) Details


Os.22702.1.S1_x_at

Description gb:BE040505
DB_XREF= gi:8335671
DB_XREF=OE07H01
TID=Os.22702.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22702 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49131 (A.thaliana) T49131 hypothetical protein F26G5.100 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g238503/11expressed protein
LOC_Os05g343301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22702.1.S1_x_at--498--3471Chr05:13631239..13631402 (25 bp)
CAGGTCAGAAAAACAATCGATGTCG
LOC_Os05g23850
Os.22702.1.S1_x_at--737--7091Chr05:13631236..13631399 (25 bp)
GTCAGAAAAACAATCGATGTCGAGC
LOC_Os05g23850
Os.22702.1.S1_x_at--1102--1412Chr05:13631233..13631396 (25 bp)
AGAAAAACAATCGATGTCGAGCTCG
LOC_Os05g23850
Os.22702.1.S1_x_at--485--1591NONE
AGCTCGGTGGCCCATGGCCGCTGCC
NONE
Os.22702.1.S1_x_at--768--8437Chr08:24069130..24069149 (20 bp)
GGCCTATTTGTAATGTGCTGCCAAG
NONE
Os.22702.1.S1_x_at--448--4451NONE
GCCTATTTGTAATGTGCTGCCAAGT
NONE
Os.22702.1.S1_x_at--1136--4291NONE
CCTATTTGTAATGTGCTGCCAAGTT
NONE
Os.22702.1.S1_x_at--534--10811NONE
TTGTAATGTGCTGCCAAGTTCTAAT
NONE
Os.22702.1.S1_x_at--1115--8111NONE
GGACTGTGCCACAACTAGATGTAAA
NONE
Os.22702.1.S1_x_at--282--4411NONE
GCCAGAACAAATGAGTGGGCCATAA
NONE
Os.22702.1.S1_x_at--978--3391NONE
CAGAACAAATGAGTGGGCCATAATT
NONE
Target Sequence 
CAGGTCAGAAAAACAATCGATGTCGAGCTCGGTGGCCCATGGCCGCTGCCGCCAGTGGAGCTGATGGCGACGCTGGCTCT
CNCAAGTTTGGGATTATCGGTGAAGTTGGTATCTGTGTTCAATGTTGATGTTGGGCCTATTTGTAATGAAGTTGGTATCT
ATGTTCAATGTTGATGTTGGGCCTATTTGTAATGTGCTGCCAAGTTCTAATTGTTGCTNCAAATAGGCTAATGCTAAAAA
TTTTCTAGANCTAATAGTGGACTGTGCCACAACTAGATGTAAAATGTGTGGNCCAAATGGGTTGGGCCAGAACAAATGAG
TGGGCCATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22702.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis