Browse Element(s) Details


Os.22928.1.S1_x_at

Description gb:AK072036.1
DB_XREF= gi:32982059
TID=Os.22928.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106D24, full insert sequence.
FL= gb:AK072036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3704011/11POT family protein, expressed
LOC_Os04g390301/11POT family protein
LOC_Os04g360401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005509molecular_functioncalcium ion binding
GO:0015112molecular_functionnitrate transporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22928.1.S1_x_at--1045--3972Chr04:22959888..22959908 (21 bp)
CGGGCAGCTGGAGTTCTTCATCCGC
LOC_Os04g39030
Os.22928.1.S1_x_at--437--10651Chr02:22364625..22364649 (25 bp)
TTCCTGGTGACGCTGTCCATGGGAT
LOC_Os02g37040
Os.22928.1.S1_x_at--277--8711Chr02:22364612..22364636 (25 bp)
TGTCCATGGGATTCTTCCTCAGCAG
LOC_Os02g37040
Os.22928.1.S1_x_at--277--7511Chr02:22364548..22364572 (25 bp)
GTGGATACGGAACGACCTCGACGCC
LOC_Os02g37040
Os.22928.1.S1_x_at--862--4712Chr04:21783778..21783801 (24 bp)
GCTGGACCTCTTCTACTGGATGCTG
LOC_Os04g36040
Os.22928.1.S1_x_at--708--2511Chr02:22364475..22364499 (25 bp)
AACTTCGCCGTGTTCCTCGTGTTCG
LOC_Os02g37040
Os.22928.1.S1_x_at--798--4611Chr02:22364451..22364475 (25 bp)
GCGAGGCGCCACGAGTACAAGCAGC
LOC_Os02g37040
Os.22928.1.S1_x_at--982--2051Chr02:22364348..22364372 (25 bp)
ACTTCGTCGTGGTCAAGGAGGCCGT
LOC_Os02g37040
Os.22928.1.S1_x_at--63--7471Chr02:22364242..22364266 (25 bp)
GTGTGCGTAGCAGTTTTCGTGCAGA
LOC_Os02g37040
Os.22928.1.S1_x_at--705--10111Chr02:22364199..22364223 (25 bp)
TATGATGCTAGCTTCAATCTCCTGA
LOC_Os02g37040
Os.22928.1.S1_x_at--385--6311Chr02:22364156..22364180 (25 bp)
GATGAGCTGAGGTAATGTTTGCCAA
LOC_Os02g37040
Target Sequence 
CGGGCAGCTGGAGTTCTTCATCCGCGAGGCGCCGGAGCGGATGAAGTCGATGAGCACGGGGCTCTTCCTGGTGACGCTGT
CCATGGGATTCTTCCTCAGCAGCTTCCTCGTCTTCGCCGTCGACGCCGCCACGCGGGGGGCGTGGATACGGAACGACCTC
GACGCCGGCAGGCTGGACCTCTTCTACTGGATGCTGGCCGTGCTCGGGGTGGCCAACTTCGCCGTGTTCCTCGTGTTCGC
GAGGCGCCACGAGTACAAGCAGCCCGCCGGCACGGCCGCCGTGGTGGTGGCGCCCGCCGCTGCCAAGGACGGCGGCGCCG
GCGAGGAGAAGGAGATGGACGACTTCGTCGTGGTCAAGGAGGCCGTAGAAGGGATGGATGTGTAGACGTGTAGTGTGTAC
GAATGTTAGTGTGCAATCGTAGTATAGAGGTTTGGGTTTTTGAGGTAGTGTGCGTAGCAGTTTTCGTGCAGAGTGCAGTG
TATGATATGATATGATGCTAGCTTCAATCTCCTGAAAAATGTTAATGGAGATAGATGAGCTGAGGTAATGTTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22928.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis