Browse Element(s) Details


Os.23676.1.S1_at

Description gb:NM_191435.1
DB_XREF= gi:34909953
GEN=P0695H10.13
TID=Os.23676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0695H10.13 (P0695H10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0695H10.13 (P0695H10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5659011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23676.1.S1_at--816--3111Chr01:32971573..32971597 (25 bp)
AATTTTCTAGAGCTCGTTTCTGGAA
LOC_Os01g56590
Os.23676.1.S1_at--967--8711Chr01:32971651..32971675 (25 bp)
TGTCGTCAGATGTTCCTTCGGTTGA
LOC_Os01g56590
Os.23676.1.S1_at--426--3971Chr01:32971669..32971693 (25 bp)
CGGTTGACTCTGTTACTGCTGATGA
LOC_Os01g56590
Os.23676.1.S1_at--793--6231Chr01:32971703..32971727 (25 bp)
GATGGCTGTACTCACTGTTTTTGGA
LOC_Os01g56590
Os.23676.1.S1_at--744--6791Chr01:32972062..32972086 (25 bp)
GTTTTCTTTATGCTGGTACTACCAC
LOC_Os01g56590
Os.23676.1.S1_at--893--9891Chr01:32972078..32972102 (25 bp)
TACTACCACACTGCAGTTTCTCTGA
LOC_Os01g56590
Os.23676.1.S1_at--641--10311Chr01:32972094..32972118 (25 bp)
TTTCTCTGATTCGTTTTCTCCACAA
LOC_Os01g56590
Os.23676.1.S1_at--563--6411Chr01:32972582..32972606 (25 bp)
GATCTCAGTTCTTACGAAGCGGTGT
LOC_Os01g56590
Os.23676.1.S1_at--178--8531Chr01:32972837..32972861 (25 bp)
TGGAAACAGCTAATGCCCTCAGCAT
LOC_Os01g56590
Os.23676.1.S1_at--282--1911Chr01:32972907..32972931 (25 bp)
ACGGGCTCATTTATTGGCTTTGCTA
LOC_Os01g56590
Os.23676.1.S1_at--655--4851Chr01:32972928..32972952 (25 bp)
GCTACCAACCTTTTCTGAGCTTGTT
LOC_Os01g56590
Target Sequence 
AATTTTCTAGAGCTCGTTTCTGGAAGGAGGTTGCAGATGTGTATGAAACCTTTCTTGTTGGATCTTGTGGACGTGTGCTG
TCGTCAGATGTTCCTTCGGTTGACTCTGTTACTGCTGATGAGACTCTTGAGATGGCTGTACTCACTGTTTTTGGAGACAA
CGTTCTGAAATTGCAGAAGGATGCTCCTGTTGAGCAGATTTTCACTGAGCTGCTTGCAGATGATGTTTTCTTTATGCTGG
TACTACCACACTGCAGTTTCTCTGATTCGTTTTCTCCACAAGTATCAGAAACCAGCAAAGTATCGATCTCAGTTCTTACG
AAGCGGTGTGAGATTATACTGGGTCAGTTTTTAGCTGATGAAAATGATCTAGGAGAAGGACCATTGCCTAGTGTAAGGAT
TGATGAGACAATTTGTGTTCTACAAGAACTCGCTAGACTAATAATAAACATGGAAACAGCTAATGCCCTCAGCATGCCAT
TATATCTAAAAGAAGCTTTAGAGAAGAATGAGTCCCATGGACGGGCTCATTTATTGGCTTTGCTACCAACCTTTTCTGAG
CTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis