Browse Element(s) Details


Os.23687.1.A1_at

Description gb:AK068598.1
DB_XREF= gi:32978615
TID=Os.23687.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154H21, full insert sequence.
FL= gb:AK068598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3278011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23687.1.A1_at--981--2471Chr02:19461001..19461025 (25 bp)
AACAGTCAGTTTGTCCAGTGGAGGT
LOC_Os02g32780
Os.23687.1.A1_at--830--10091Chr02:19460977..19461001 (25 bp)
TATGAATTGTCAGCTTGTAGGTCGC
LOC_Os02g32780
Os.23687.1.A1_at--341--8751Chr02:19460962..19460986 (25 bp)
TGTAGGTCGCACAGCATCCGCACAT
LOC_Os02g32780
Os.23687.1.A1_at--424--5111Chr02:19460943..19460967 (25 bp)
GCACATTTTACCAGCGGACCAAGAG
LOC_Os02g32780
Os.23687.1.A1_at--672--8091Chr02:19460928..19460952 (25 bp)
GGACCAAGAGAGTCTCCACTTTCCA
LOC_Os02g32780
Os.23687.1.A1_at--429--4371Chr02:19460906..19460930 (25 bp)
CCACTCTTGGAGTCTTGCTTTGAAA
LOC_Os02g32780
Os.23687.1.A1_at--276--7631Chr02:19460852..19460876 (25 bp)
GGGAAATGCCTTTACCAGACAGAAA
LOC_Os02g32780
Os.23687.1.A1_at--1087--171Chr02:19460828..19460852 (25 bp)
ATTTGGCCTTTACCAGTGGTATCGT
LOC_Os02g32780
Os.23687.1.A1_at--568--7851Chr02:19460811..19460835 (25 bp)
GGTATCGTTCGACAGTTTATTGCAA
LOC_Os02g32780
Os.23687.1.A1_at--97--3571Chr02:19460672..19460696 (25 bp)
CATAATTTCTTCTGTCTTTGGTTGG
LOC_Os02g32780
Os.23687.1.A1_at--207--6591Chr02:19460617..19460641 (25 bp)
GATTCCACTGGGTTATTATGATTAA
LOC_Os02g32780
Target Sequence 
AACAGTCAGTTTGTCCAGTGGAGGTATGAATTGTCAGCTTGTAGGTCGCACAGCATCCGCACATTTTACCAGCGGACCAA
GAGAGTCTCCACTTTCCACTCTTGGAGTCTTGCTTTGAAAATTCCTGTATATGCAATTCTTTTTTTTAAGGGAAATGCCT
TTACCAGACAGAAATTTGGCCTTTACCAGTGGTATCGTTCGACAGTTTATTGCAAAAGATTCTGCAGGGTTGGGGGTATT
GTATAGTATAGTGGCAGTAGTGAACATTGTAACTGCAAATTGTTGTACTCCTAATTTGTATATATAGGTACTACACTTTA
GACGATGTACATAATTTCTTCTGTCTTTGGTTGGAATATGATTCTTCTAGCAAAAAGGGGAAAAGATTCCACTGGGTTAT
TATGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23687.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis