Browse Element(s) Details


Os.2375.1.S1_at

Description gb:AF257779.1
DB_XREF= gi:7739774
TID=Os.2375.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2375 (NCBI UniGene Cluster)
DEF=Oryza sativa stress-inducible protein mRNA, complete cds.
PROD=stress-inducible protein
FL= gb:AF257779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4198011/11stress-induced protein OZI1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006950biological_processresponse to stress
GO:0009618biological_processresponse to pathogenic bacteria
GO:0010193biological_processresponse to ozone
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2375.1.S1_at--1088--4671Chr04:24656231..24656255 (25 bp)
GCGGTACCATTTTTGCAGAGCCATC
LOC_Os04g41980
Os.2375.1.S1_at--257--7191Chr04:24656283..24656307 (25 bp)
GTCGGATCAGTGACGGCATCCTTTG
LOC_Os04g41980
Os.2375.1.S1_at--209--4311Chr04:24656308..24656332 (25 bp)
CCTTTGCTTATGTTTGCGGCGTTTA
LOC_Os04g41980
Os.2375.1.S1_at--581--1991Chr04:24656463..24656487 (25 bp)
ACTCCTCGCACGGTGGCAGACAAGG
LOC_Os04g41980
Os.2375.1.S1_at--490--3491Chr04:24656521..24656545 (25 bp)
CATGGCCTCGCGTTGCAGGGAAGCC
LOC_Os04g41980
Os.2375.1.S1_at--877--5271Chr04:24656615..24656639 (25 bp)
GAAGGCATCCGAGCCCTGAAAACTG
LOC_Os04g41980
Os.2375.1.S1_at--377--7311Chr04:24656662..24656686 (25 bp)
GTGCTAAAACATTCTGTGGCAGTTA
LOC_Os04g41980
Os.2375.1.S1_at--638--5291Chr04:24656733..24656757 (25 bp)
GAAGTGTGTTACTGCTTAAGCTTTG
LOC_Os04g41980
Os.2375.1.S1_at--846--2691Chr04:24656750..24656774 (25 bp)
AAGCTTTGATTTTTCATACCTGACA
LOC_Os04g41980
Os.2375.1.S1_at--343--4971Chr04:24656785..24656809 (25 bp)
GCATCAGCTGAGTGGTGACTTCAAG
LOC_Os04g41980
Os.2375.1.S1_at--1154--2711Chr04:24656807..24656831 (25 bp)
AAGCAGCAGGACATCATATCATCGA
LOC_Os04g41980
Target Sequence 
GCGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCT
TTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAA
TGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCNCCATGAACCCAGTCACCCG
CCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGA
GTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTG
TTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAAG
CAGCAGGACATCATATCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis