Browse Element(s) Details


Os.24315.1.S2_at

Description gb:AK101413.1
DB_XREF= gi:32986622
TID=Os.24315.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037J15, full insert sequence.
FL= gb:AK101413.1 gb:AK108691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4670011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009706cellular_componentchloroplast inner membrane
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0005319molecular_functionlipid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24315.1.S2_at--101--6851Chr04:27474633..27474657 (25 bp)
GTTTCTGTTCTCCAATTGAGTCTGA
LOC_Os04g46700
Os.24315.1.S2_at--1016--6091Chr04:27474650..27474674 (25 bp)
GAGTCTGACTTCTGAATTTGGTATT
LOC_Os04g46700
Os.24315.1.S2_at--911--8671Chr04:27474706..27474730 (25 bp)
TGTGTAGACCATGTTCAGTTTCAGA
LOC_Os04g46700
Os.24315.1.S2_at--1030--931Chr04:27474763..27474787 (25 bp)
AGGAACTGTCTTACTACTTACTAGC
LOC_Os04g46700
Os.24315.1.S2_at--593--10011Chr04:27474805..27474829 (25 bp)
TAGCTATTGTCATTACCTGGCAGAA
LOC_Os04g46700
Os.24315.1.S2_at--1065--2371Chr04:27474870..27474894 (25 bp)
AAACGACTGGTATTGCCATGTGGTA
LOC_Os04g46700
Os.24315.1.S2_at--268--9531Chr04:27474943..27474967 (25 bp)
TCTCATCTAGCAACACGTGCGTTTG
LOC_Os04g46700
Os.24315.1.S2_at--790--6811Chr04:27475023..27475047 (25 bp)
GTTTTATCTGTTCTGTACTCGAGTG
LOC_Os04g46700
Os.24315.1.S2_at--1076--3871Chr04:27475035..27475059 (25 bp)
CTGTACTCGAGTGTAGTCTACGGTT
LOC_Os04g46700
Os.24315.1.S2_at--1008--1831Chr04:27475075..27475099 (25 bp)
ACGCAGCTTTTCACTTGTTGAGAAA
LOC_Os04g46700
Os.24315.1.S2_at--415--5131Chr04:27475107..27475131 (25 bp)
GCAAACTGTAAATCCAAGGCACGAT
LOC_Os04g46700
Target Sequence 
GTTTCTGTTCTCCAATTGAGTCTGACTTCTGAATTTGGTATTTGAACTGGCAAGGGTCGAAGCACNTATGACATGTGTAG
ACCATGTTCAGTTTCAGAAAAGCACAGCCNGCCGCCAAAATTCAAGCACACAGGAACTGTCTTACTACTTACTAGCTGTG
TTTCTTTATATTTTAGCTATTGTCATTACCTGGCAGAAGTTTGTTGTGGTATTATATTGATGTGATCTTTTTGAATGAAA
ACGACTGGTATTGCCATGTGGTAGAAACGGTCAAGCAGCCGNACATTTGNTTCTCTTGCTGNTGCTTGNGNTCTCATCTA
GCAACACGTGCGTTTGNGGGTTCACCTGCTGAAGNGCTAATACTTGNTCCGNGGATTATACATCTGATCGAGTTTTATCT
GTTCTGTACTCGAGTGTAGTCTACGGTTATACGTGATAAAAATACGCAGCTTTTCACTTGTTGAGAAACAATCATGCAAA
CTGTAAATCCAAGGCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24315.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis