Browse Element(s) Details


Os.24764.1.S1_a_at

Description gb:AK068881.1
DB_XREF= gi:32978906
TID=Os.24764.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001G05, full insert sequence.
FL= gb:AK068881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5108011/11Scramblase family protein, expressed
LOC_Os02g1429011/11Scramblase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51040Os.49816.1.S1_at11/114+29995979..29998607wall-associated kinase 1, putative, expressed
LOC_Os04g51050Os.49780.1.S1_x_at11/114+30001212..30004083wall-associated kinase 1, putative, expressed
LOC_Os04g51060Os.14046.1.S1_at11/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.1.S1_x_at2/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.3.S1_x_at1/114+30005404..30011390expressed protein
LOC_Os04g51070Os.49995.1.S1_at11/114+30016340..30019772Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24764.1.S1_a_at--89--8312Chr04:30025886..30025910 (25 bp)
GGCTTATCAACAGTTCCATTTATGC
LOC_Os04g51080
Os.24764.1.S1_a_at--692--3772Chr04:30026067..30026091 (25 bp)
CTCTGGCGTAGAATTTATGACCTGT
LOC_Os04g51080
Os.24764.1.S1_a_at--456--10092Chr04:30026232..30026256 (25 bp)
TAGGCAATTTGCTGTGGTCGAGAAT
LOC_Os04g51080
Os.24764.1.S1_a_at--217--4732Chr04:30026242..30026266 (25 bp)
GCTGTGGTCGAGAATCCTGGATTTT
LOC_Os04g51080
Os.24764.1.S1_a_at--67--10252Chr04:30026264..30026288 (25 bp)
TTTGGAACTGGACCTTTACTCTCAC
LOC_Os04g51080
Os.24764.1.S1_a_at--573--7992Chr04:30026295..30026319 (25 bp)
GGATGACAATGTACTAGCCCAGATT
LOC_Os04g51080
Os.24764.1.S1_a_at--725--7012Chr04:30026305..30026329 (25 bp)
GTACTAGCCCAGATTGATCGTAATT
LOC_Os04g51080
Os.24764.1.S1_a_at--452--7392Chr04:30026800..30026824 (25 bp)
GTGATGCAGGACTAAACCGTAAATT
LOC_Os04g51080
Os.24764.1.S1_a_at--496--4232Chr04:30026816..30026840 (25 bp)
CCGTAAATTTGGTCTCGCTTCAGAT
LOC_Os04g51080
Os.24764.1.S1_a_at--351--7812Chr04:30026826..30026976 (25 bp)
GGTCTCGCTTCAGATATCGATGAAC
LOC_Os04g51080
Os.24764.1.S1_a_at--777--4052Chr04:30026969..30026993 (25 bp)
CGATGAACTGCATGTTGTTCGCCAG
LOC_Os04g51080
Target Sequence 
GGCTTATCAACAGTTCCATTTATGCAGAAGTGAATGGCAAGGAGGTAGGTGTAGTCCACAGACGTTGNCATCTCTGGCGT
AGAATTTATGACCTGTACTTAGGGAATAGGCAATTTGCTGTGGTCGAGAATCCTGGATTTTGGAACTGGACCTTTACTCT
CACAGATGAGGATGACAATGTACTAGCCCAGATTGATCGTAATTGGAGGGGAATCGGTTTTGANCTCTTCACAGATGCTG
GCCNGTATGCAATTCGATTTGGTGATGCAGGACTAAACCGTAAATTTGGTCTCGCTTCAGATATCGATGAACTGCATGTT
GTTCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24764.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis