Browse Element(s) Details


Os.24774.1.S1_at

Description gb:AK100042.1
DB_XREF= gi:32985251
TID=Os.24774.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152C17, full insert sequence.
FL= gb:AK100042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1850011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24774.1.S1_at--722--1051Chr03:10348463..10348487 (25 bp)
AGGTGGTCCTAAAGCTACATGTGTT
LOC_Os03g18500
Os.24774.1.S1_at--1014--10271Chr03:10348426..10348450 (25 bp)
TTTGCCACCTTCTCGGTAATGATTG
LOC_Os03g18500
Os.24774.1.S1_at--888--6551Chr03:10348292..10348316 (25 bp)
GATTCAGCATCCAAAACAACCTTTA
LOC_Os03g18500
Os.24774.1.S1_at--616--8951Chr03:10348244..10348268 (25 bp)
TGACATGTCTTCTGAGGTCTTGCAG
LOC_Os03g18500
Os.24774.1.S1_at--463--10171Chr03:10348098..10348122 (25 bp)
TATCATTCTCACTATACGGCTGCTA
LOC_Os03g18500
Os.24774.1.S1_at--1066--311Chr03:10348085..10348109 (25 bp)
ATACGGCTGCTATATTTATCTTCGC
LOC_Os03g18500
Os.24774.1.S1_at--829--10411Chr03:10348070..10348094 (25 bp)
TTATCTTCGCAATCCGTATCCAATT
LOC_Os03g18500
Os.24774.1.S1_at--398--212Chr12:5900973..5901087 (24 bp)
ATTTGCTGTTATCTTGTCTCACGTT
NONE
Os.24774.1.S1_at--691--7071Chr03:10348033..10348057 (25 bp)
GTCTCACGTTACTCCAATTCTTTAT
LOC_Os03g18500
Os.24774.1.S1_at--371--7531Chr03:10347980..10348004 (25 bp)
GTGGCACGATATTTGGGACTGTTCA
LOC_Os03g18500
Os.24774.1.S1_at--94--1972Chr07:6015181..6015211 (25 bp)
ACTGATCAAGTGTTGTACCATCTTT
NONE
Target Sequence 
AGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTC
ATTCNTGAATCATTGGTGGANACATTTNATCGCCTTATTNGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCA
ACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCATTTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTT
GCAGANCAAGATTTTGTTATTTTACGAGTGTTACCCAACATNGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAAT
CGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTT
CGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTNTGACAAT
CTAGTGGCACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis