Browse Element(s) Details


Os.24775.1.A1_s_at

Description gb:CA762601
DB_XREF= gi:25806640
DB_XREF=BR060014B20G09.ab1
CLONE=BR060014B20G09.ab1
TID=Os.24775.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24775 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196118.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1622011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24775.1.A1_s_at--1120--4951Chr01:9176510..9176534 (25 bp)
GCATATGATATGTCGACTGCGCCAA
LOC_Os01g16220
Os.24775.1.A1_s_at--26--1971Chr01:9176495..9176519 (25 bp)
ACTGCGCCAAAGGACTGCCGGGTTT
LOC_Os01g16220
Os.24775.1.A1_s_at--875--3811Chr01:9176481..9176505 (25 bp)
CTGCCGGGTTTCTGGGTGGTATCAA
LOC_Os01g16220
Os.24775.1.A1_s_at--862--6211Chr01:9176444..9176468 (25 bp)
GAGGCGTATTCAGGTCATGCTGCAA
LOC_Os01g16220
Os.24775.1.A1_s_at--113--3431Chr01:9176363..9176387 (25 bp)
CAGACATTCGACATTACAGCACCAG
LOC_Os01g16220
Os.24775.1.A1_s_at--958--8591Chr01:9176320..9176344 (25 bp)
TGGTCCGACTGGACTTCACTTCAAA
LOC_Os01g16220
Os.24775.1.A1_s_at--535--10511Chr01:9176301..9176325 (25 bp)
TTCAAACCATGGAAGCTCCGCGCTA
LOC_Os01g16220
Os.24775.1.A1_s_at--548--5871Chr01:9176243..9176267 (25 bp)
GAGCCGGTCTCACCAGGAATGTCAG
LOC_Os01g16220
Os.24775.1.A1_s_at--54--5291Chr01:9176227..9176251 (25 bp)
GAATGTCAGTTTCTCAGTCCTGAGA
LOC_Os01g16220
Os.24775.1.A1_s_at--641--7991Chr01:9176123..9176147 (25 bp)
GGATGTTATCATGTACACTCTGTAA
LOC_Os01g16220
Os.24775.1.A1_s_at--53--10711Chr01:9176084..9176108 (25 bp)
TTGCTGCAATCGTCTAGCCCAATGA
LOC_Os01g16220
Target Sequence 
GCATATGATATGTCGACTGCGCCAAAGGACTGCCGGGTTTCTGGGTGGTATCAAGAGGCACATAATNGAGGCGTATTCAG
GTCATGCTGCAAGCGCAAAGATGTATGTCTTGACTGAATTCACATATGATCTAGACAAGAAGAATGTCCAGACATTCGAC
ATTACAGCACCAGATGTTGGCATCATCAACATGGTCCGACTGGACTTCACTTCAAACCATGGAAGCTCCGCGCTAACCTG
CATTTACCGCATCCGGGTCCATGGTCATGAGCCGGTCTCACCAGGAATGTCAGTTTCTCAGTCCTGAGATGGGAAATGCT
TTTGTTTCTGTCTCTTGTAAGTGTTTTGGTTTAGGGATCTCNTTGTGCCNTTGCTAGTTTTCAGCGTAGGATGTTATCAT
GTACACTCTGTAAAGGTAATGATTGTTTTGCTGCAATCGTCTAGCCCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24775.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis