Browse Element(s) Details


Os.24828.1.S2_at

Description gb:AK072358.1
DB_XREF= gi:32982381
TID=Os.24828.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056H23, full insert sequence.
FL= gb:AK105629.1 gb:AK072358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3162011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24828.1.S2_at--630--1611Chr11:17983157..17983181 (25 bp)
AGCTGATTCAGTAGTTGGACCCTCC
LOC_Os11g31620
Os.24828.1.S2_at--613--8531Chr11:17983142..17983166 (25 bp)
TGGACCCTCCAATTTGTTGCAGCAT
LOC_Os11g31620
Os.24828.1.S2_at--1160--6651Chr11:17983127..17983151 (25 bp)
GTTGCAGCATTTCAGCACTGGTCAA
LOC_Os11g31620
Os.24828.1.S2_at--915--5191Chr11:17983077..17983101 (25 bp)
GAATTTGAGTAGATCCCCATCCTGT
LOC_Os11g31620
Os.24828.1.S2_at--471--3131Chr11:17983033..17983057 (25 bp)
AATTTTTCTTTCTGATGTCGCAATC
LOC_Os11g31620
Os.24828.1.S2_at--675--3031Chr11:17983012..17983036 (25 bp)
AATCCAATGTCCATGTCGCTGCAAG
LOC_Os11g31620
Os.24828.1.S2_at--1110--7491Chr11:17982982..17983006 (25 bp)
GTGGCTTGGAAGTCAGTCATCTCGC
LOC_Os11g31620
Os.24828.1.S2_at--381--9651Chr11:17982970..17982994 (25 bp)
TCAGTCATCTCGCTGTCAGTTGTAG
LOC_Os11g31620
Os.24828.1.S2_at--153--2111Chr11:17982888..17982912 (25 bp)
ACATGCTTATTCCTGCACGGTTTAG
LOC_Os11g31620
Os.24828.1.S2_at--625--10331Chr11:17982858..17982882 (25 bp)
TTTAATTGACCACCATCATCGCTTG
LOC_Os11g31620
Os.24828.1.S2_at--729--9611Chr11:17982843..17982867 (25 bp)
TCATCGCTTGCTGTTTGATCATTAG
LOC_Os11g31620
Target Sequence 
AGCTGATTCAGTAGTTGGACCCTCCAATTTGTTGCAGCATTTCAGCACTGGTCAAGACTAATCTGTGATTTACAGTTTGA
GAATTTGAGTAGATCCCCATCCTGTTTACCTTCAAATACTCTGAAATTTTTCTTTCTGATGTCGCAATCCAATGTCCATG
TCGCTGCAAGACAGGGTGGCTTGGAAGTCAGTCATCTCGCTGTCAGTTGTAGCGTGGGTGTACTGGTGTTGCTCACAGTT
TGATATCATCATCATGGCCATCACACAACATGCTTATTCCTGCACGGTTTAGCAAGCTTTAATTGACCACCATCATCGCT
TGCTGTTTGATCATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24828.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis