Browse Element(s) Details


Os.24954.1.A1_s_at

Description gb:BX928208
DB_XREF= gi:41883013
DB_XREF=BX928208
CLONE=y609b08p3
TID=Os.24954.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24954 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0211011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class
LOC_Os03g02130Os.38395.3.S1_x_at8/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.2.S1_x_at6/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.1.S1_at6/113+666915..668224hypothetical protein
LOC_Os03g02140Os.38395.4.S1_x_at6/113+671415..675170transposon protein, putative, Mutator sub-class
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24954.1.A1_s_at--162--531Chr03:659558..659582 (25 bp)
ATCGAGCAGTGGATTGTGCGAAGTT
LOC_Os03g02110
Os.24954.1.A1_s_at--889--8491Chr03:659629..659653 (25 bp)
TGGCAAGTGGAACTGTCCGTCTGTC
LOC_Os03g02110
Os.24954.1.A1_s_at--1001--4011Chr03:659646..659670 (25 bp)
CGTCTGTCCGTCCAAGTTGATGAGA
LOC_Os03g02110
Os.24954.1.A1_s_at--87--6311Chr03:659664..659688 (25 bp)
GATGAGAGCTTGTCACCTAGTGGAT
LOC_Os03g02110
Os.24954.1.A1_s_at--521--1091Chr03:659682..659706 (25 bp)
AGTGGATTTTCCTGGCTGGACGAGC
LOC_Os03g02110
Os.24954.1.A1_s_at--956--8331Chr03:659710..659734 (25 bp)
GGCGGCGTGTCATGACAACTAGGAA
LOC_Os03g02110
Os.24954.1.A1_s_at--1052--6871Chr03:659735..659759 (25 bp)
GTATGCAACTAATGACTAACGTGAC
LOC_Os03g02110
Os.24954.1.A1_s_at--1101--5691Chr03:659748..659772 (25 bp)
GACTAACGTGACATGTTTGTTGGTA
LOC_Os03g02110
Os.24954.1.A1_s_at--205--5451Chr03:659803..659827 (25 bp)
GAACCCATGATGTTAACTGGTGAAA
LOC_Os03g02110
Os.24954.1.A1_s_at--417--6551Chr03:659856..659880 (25 bp)
GATTCTTGAACCAGCCATGAGGCCG
LOC_Os03g02110
Os.24954.1.A1_s_at--305--3511Chr03:659871..659895 (25 bp)
CATGAGGCCGTGATGTTAACTGGTG
LOC_Os03g02110
Target Sequence 
ATCGAGCAGTGGATTGTGCGAAGTTTAAGCNGTAGNGCTGTACTGGTATCACTCATNGGTGGACGGTGACAATGGCAAGT
GGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTGTCACCTAGTGGATTTTCCTGGCTGGACGAGCAGNGGCGGCG
TGTCATGACAACTAGGAAGTATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGNTTCTGCAATCTTTAACC
AACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAATCTTGATTCTTGAACCAGCC
ATGAGGCCGTGATGTTAACTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24954.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis