Browse Element(s) Details


Os.25093.1.A1_at

Description gb:AK062659.1
DB_XREF= gi:32972677
TID=Os.25093.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F03, full insert sequence.
FL= gb:AK062659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g013302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25093.1.A1_at--372--5951Chr12:25847103..25847127 (25 bp)
GAGACAGCGCCAGGGACGTGGTTCG
NONE
Os.25093.1.A1_at--407--3752Chr12:25839907..25839931 (25 bp)
CTCTATACTGAACTGTGGTTTTGTA
NONE
Os.25093.1.A1_at--450--9912Chr12:25839902..25839926 (25 bp)
TACTGAACTGTGGTTTTGTACAATA
NONE
Os.25093.1.A1_at--124--3711Chr12:25839866..25839890 (25 bp)
CTAGGTTGTGCTTATGCTTTGACGT
NONE
Os.25093.1.A1_at--1060--7911Chr12:25839863..25839887 (25 bp)
GGTTGTGCTTATGCTTTGACGTTAA
NONE
Os.25093.1.A1_at--790--4891Chr12:25839857..25839881 (25 bp)
GCTTATGCTTTGACGTTAAGCTGGA
NONE
Os.25093.1.A1_at--939--1371Chr12:25839779..25839803 (25 bp)
AGAGCGTTTTGGACTGGTGCTCGCA
NONE
Os.25093.1.A1_at--1046--10391Chr12:25839773..25839797 (25 bp)
TTTTGGACTGGTGCTCGCACGCGGC
NONE
Os.25093.1.A1_at--318--5091Chr12:25839757..25839781 (25 bp)
GCACGCGGCGCTATCCATTTTTATT
NONE
Os.25093.1.A1_at--405--3931Chr12:25839752..25839776 (25 bp)
CGGCGCTATCCATTTTTATTCACAT
NONE
Os.25093.1.A1_at--417--4871Chr12:25839748..25839772 (25 bp)
GCTATCCATTTTTATTCACATGACA
NONE
Target Sequence 
GAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCTGGCGGCGCAGTCGGCAAGGACCTAGGGGGGG
GGGGGGGGGCAGCGAGCAGACCAACANCCATTTTTGTCCTTNCATTCCTNTCCAAATCAAGTTTCTGCAGCAANCGGTGC
AAACTAAAGATGGCGGNATTCGGCAGCCTGGCACCCAAGACCAAGANCATAGTGGTGGCTGGAGGACTCTCTGCTTTCGT
CCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGGCA
TGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTA
TACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGGANNANTTTTNN
NCTGAATCGACTATATTAAAANNNNNNNNNNNNNGCNGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTATC
CATTTTTATTCACATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25093.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis