Browse Element(s) Details


Os.25180.1.S1_at

Description gb:AK099989.1
DB_XREF= gi:32985198
TID=Os.25180.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130P18, full insert sequence.
FL= gb:AK099989.1 gb:AK071671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2705011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25180.1.S1_at--1087--5331Chr08:16393092..16393116 (25 bp)
GAAGTTTACCCATGCATCATAGAGT
LOC_Os08g27050
Os.25180.1.S1_at--767--291Chr08:16393074..16393098 (25 bp)
ATAGAGTTCCTTTCTCACCATGATC
LOC_Os08g27050
Os.25180.1.S1_at--571--771Chr08:16392930..16392954 (25 bp)
ATGTGACATGGCCAGCTGCGCAAAA
LOC_Os08g27050
Os.25180.1.S1_at--1103--7011Chr08:16392900..16392924 (25 bp)
GTAAACCCACAGAACTCGTAGGATG
LOC_Os08g27050
Os.25180.1.S1_at--1162--2351Chr08:16392866..16392890 (25 bp)
AAACAGGTGTACCATGCGTCAGTGC
LOC_Os08g27050
Os.25180.1.S1_at--302--7871Chr08:16392811..16392835 (25 bp)
GGTATATTACATGTGCCCCTAGAAA
LOC_Os08g27050
Os.25180.1.S1_at--374--4751Chr08:16392760..16392784 (25 bp)
GCTGAACTCATTCTTTGACCTTGTT
LOC_Os08g27050
Os.25180.1.S1_at--1041--5831Chr08:16392744..16392768 (25 bp)
GACCTTGTTTCCTTAGTTGATGTTG
LOC_Os08g27050
Os.25180.1.S1_at--1138--3011Chr08:16392711..16392735 (25 bp)
AATACTTGGCTTCTGTTGTTGTAAC
LOC_Os08g27050
Os.25180.1.S1_at--1059--311Chr08:16392656..16392680 (25 bp)
ATACTGTTGGCATGTAGCGCTGTCT
LOC_Os08g27050
Os.25180.1.S1_at--1069--6951Chr08:16392643..16392667 (25 bp)
GTAGCGCTGTCTGCATTTGTAATGA
LOC_Os08g27050
Target Sequence 
GAAGTTTACCCATGCATCATAGAGTTCCTTTCTCACCATGATCAGTAGTTTATGTAACAGTGAAGCTCCTGAAATTTCAA
TACGATGCGGAGTCAATGATACAATATATGTTCACCTCAGATGGTTTTTGAGTTGAGCTGAACAAACTTTCCAAGGTTGG
CCATGTGACATGGCCAGCTGCGCAAAATATAGGTAAACCCACAGAACTCGTAGGATGTATCCTTGTAAACAGGTGTACCA
TGCGTCAGTGCNCCACTTGTTATACAAAACCTATAAATATAGGTATATTACATGTGCCCCTAGAAATATAACAAATTCAA
AAGAAATTGTATGCTGAACTCATTCTTTGACCTTGTTTCCTTAGTTGATGTTGATCCTTCAAATACTTGGCTTCTGTTGT
TGTAACAAAATGAAATGGACTGATATGTACTGGGATATACTGTTGGCATGTAGCGCTGTCTGCATTTGTAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis