Browse Element(s) Details


Os.25223.1.A1_at

Description gb:AK120748.1
DB_XREF= gi:37990371
TID=Os.25223.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004O05, full insert sequence.
FL= gb:AK120748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6169010/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25223.1.A1_at--776--1731NONE
ACCATCAACGAGCTGGAAGTGCAAG
NONE
Os.25223.1.A1_at--801--331Chr03:34902543..34902567 (25 bp)
ATAAAGGCAGCTCTCCATGAAGCAG
LOC_Os03g61690
Os.25223.1.A1_at--741--931Chr03:34902547..34902571 (25 bp)
AGGCAGCTCTCCATGAAGCAGCACG
LOC_Os03g61690
Os.25223.1.A1_at--894--1891Chr03:34902575..34902599 (25 bp)
ACGTGAGATGCGTTATTCAGACCTT
LOC_Os03g61690
Os.25223.1.A1_at--461--6331Chr03:34902581..34902605 (25 bp)
GATGCGTTATTCAGACCTTATGAAG
LOC_Os03g61690
Os.25223.1.A1_at--24--8831Chr03:34902761..34902785 (25 bp)
TGATCAGTTTCTGTGGGCAACAATC
LOC_Os03g61690
Os.25223.1.A1_at--1152--6831Chr03:34902767..34902791 (25 bp)
GTTTCTGTGGGCAACAATCGCTACT
LOC_Os03g61690
Os.25223.1.A1_at--207--2051Chr03:34902956..34902980 (25 bp)
ACTTTGCCTAGAGTTGAGGGAGCTT
LOC_Os03g61690
Os.25223.1.A1_at--728--6131Chr03:34902971..34902995 (25 bp)
GAGGGAGCTTTATTAAGGATTATCA
LOC_Os03g61690
Os.25223.1.A1_at--306--3171Chr03:34903006..34903030 (25 bp)
AATTGATTCATTTGTTCTCGTTTAC
LOC_Os03g61690
Os.25223.1.A1_at--276--6671Chr03:34903019..34903043 (25 bp)
GTTCTCGTTTACATAAGCTAGTTTC
LOC_Os03g61690
Target Sequence 
ACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTAT
TCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCNTTTCCNTGACGATATCACNGTCATCGTNTTATTCATAAATTA
TGNCCNATTAGCTAAAGGTCATTCNCAAGGGCAATCTCTATCCNTNAGATGTGCTTTAGATCNTTGATTATGAGCTAATC
CTNCCNTGAATGATCAGTTTCTGTGGGCAACAATCGCTACTNTGATGGTTTCATCAACCATACCNTTGTGAACAGCCCNC
AACCTCCTGCAGCAGNTTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCNCATAAAACTGACTACCTTNTAAATTGTCAGTT
TTCCCCNCNAACGAATNGGATAAATGTGCATATTCCTGAANCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGA
TTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25223.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis