Browse Element(s) Details


Os.25647.1.S1_at

Description gb:AK058215.1
DB_XREF= gi:32968233
TID=Os.25647.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25647 (NCBI UniGene Cluster)
UG_TITLE=Mov34 homolog mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D12, full insert sequence.
FL= gb:AK058215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3907011/11COP9 signalosome complex subunit 6a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25647.1.S1_at--169--4411Chr08:24549299..24549323 (25 bp)
GCCACTGGACAATTCGCTGCTTAGG
LOC_Os08g39070
Os.25647.1.S1_at--724--91Chr08:24549288..24549312 (25 bp)
ATTCGCTGCTTAGGCAAGTCTCAAG
LOC_Os08g39070
Os.25647.1.S1_at--785--3651Chr08:24549096..24549120 (25 bp)
CTTACCTTGCTATGTTCACTAACTG
LOC_Os08g39070
Os.25647.1.S1_at--607--7891Chr08:24548667..24548691 (25 bp)
GGTTCTCTGCTGAGATTTTGGAAAT
LOC_Os08g39070
Os.25647.1.S1_at--990--8391Chr08:24548630..24548654 (25 bp)
GGCCAGGAAGTTTTTGCGTATAATC
LOC_Os08g39070
Os.25647.1.S1_at--660--3051Chr08:24548609..24548633 (25 bp)
AATCTGTTAGGAACTATATCTGGCA
LOC_Os08g39070
Os.25647.1.S1_at--510--6651Chr08:24548527..24548551 (25 bp)
GTTGATATTCTTGATTCTGTGCCTA
LOC_Os08g39070
Os.25647.1.S1_at--359--8691Chr08:24548510..24548534 (25 bp)
TGTGCCTAGATCGTTGTTTATTCCT
LOC_Os08g39070
Os.25647.1.S1_at--474--7851Chr08:24548440..24548464 (25 bp)
GGTAGTTACACTATTTGACTCCCTA
LOC_Os08g39070
Os.25647.1.S1_at--873--191Chr08:24548428..24548452 (25 bp)
ATTTGACTCCCTAAATGGATATGGA
LOC_Os08g39070
Os.25647.1.S1_at--956--3471Chr08:24548401..24548425 (25 bp)
CAGGTTTCCTGAGTTATGCTTGTAA
LOC_Os08g39070
Target Sequence 
GCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAG
ATGACTTCCTAATGGAATACANATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGCACAATGAA
TGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATNT
TTCCCCCTTCTGCATCTGCAGCTGGTTCTCTGCTGAGATTTTGGAAATAGTTACCCATATGGCCAGGAAGTTTTTGCGTA
TAATCTGTTAGGAACTATATCTGGCAGCCATCAAGTTTCNTTCCAAACTCATGCTCCCTCGTTCAGGATTGACACGGCAN
AACATGTTGATATTCTTGATTCTGTGCCTAGATCGTTGTTTATTCCTCATTCGCCAAGATTGACATGTAAAGTTTATCCC
CATCACCCCCATGGTAGTTACACTATTTGACTCCCTAAATGGATATGGATGCAGGTTTCCTGAGTTATGCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis