Browse Element(s) Details


Os.2622.1.S1_at

Description gb:AY167575.1
DB_XREF= gi:32394964
GEN=EDR1
TID=Os.2622.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2622 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) EDR1 (EDR1) mRNA, complete cds.
PROD=EDR1
FL= gb:AY167575.1 gb:AK111595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0641011/11EDR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2622.1.S1_at--310--8511Chr03:3186252..3186276 (25 bp)
TGGCACCTGAGGTCTTGCGGAATGA
LOC_Os03g06410
Os.2622.1.S1_at--5--3251Chr03:3186643..3186667 (25 bp)
CAAGCGGCTCGATATTCCCAAGGAA
LOC_Os03g06410
Os.2622.1.S1_at--46--5311Chr03:3186820..3186841 (22 bp)
GAAGGATCCAAATTTGCGGCCCTCG
LOC_Os03g06410
Os.2622.1.S1_at--477--4531Chr03:3186835..3186859 (25 bp)
GCCCTCGTTTGCACAGTTAACCAGT
LOC_Os03g06410
Os.2622.1.S1_at--301--8271Chr03:3186871..3186895 (25 bp)
TGTCCAAAGGCTAGTAACCCCTTCT
LOC_Os03g06410
Os.2622.1.S1_at--840--4531Chr03:3186912..3186936 (25 bp)
GCCCTCCTGTGCCTCAAGAAATATG
LOC_Os03g06410
Os.2622.1.S1_at--278--9011Chr03:3186939..3186963 (25 bp)
TGAATTCTTCCACCCCTTGATGTTG
LOC_Os03g06410
Os.2622.1.S1_at--116--7591Chr03:3186966..3186990 (25 bp)
GGGCATTCCACTCTCAAAATTGTGA
LOC_Os03g06410
Os.2622.1.S1_at--745--791Chr03:3187036..3187060 (25 bp)
ATGTGGGCGCACTGTAGATTCTAGC
LOC_Os03g06410
Os.2622.1.S1_at--625--4511Chr03:3187086..3187110 (25 bp)
GCCGCGACAAAAGAACCCAGCAGTA
LOC_Os03g06410
Os.2622.1.S1_at--1040--2271Chr03:3187161..3187185 (25 bp)
AAATCCAGTCTGTGGCATCTCATTT
LOC_Os03g06410
Target Sequence 
TGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAGTGNGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTA
GCAACACTTAGGATGCCATGGAGTGGAATGAATCCAATGCAAGTTGTTGGGGCAGTCGGCTTCCAGGACAAGCGGCTCGA
TATTCCCAAGGAAATTGATCCTCTAGTTGCAAGGATCATATGGGAATGCTGGCAGAAGGATCCAAATTTGCGGCCCTCGT
TTGCACAGTTAACCAGTGCTTTGAAGACTGTCCAAAGGCTAGTAACCCCTTCTCACCAGGAGTCCCAGAGCCCTCCTGTG
CCTCAAGAAATATGGGTGAATTCTTCCACCCCTTGATGTTGAGGGGCATTCCACTCTCAAAATTGTGAGTAATTATTGAT
GATTGTTGCTGTTAAGTTTGTTCAAGTCTGCAAATGTGGGCGCACTGTAGATTCTAGCGNCCCTAATGGTAGACATCCCN
TGCTGCCGCGACAAAAGAACCCAGCAGTAGAGTATGTATAGAGACTATAGTCATCGACCAAAACGATGACCCGAAGAAGA
AATCCAGTCTGTGGCATCTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis