Browse Element(s) Details


Os.26570.1.S1_s_at

Description gb:AK059299.1
DB_XREF= gi:32969317
TID=Os.26570.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.27 (P0679C12.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F01, full insert sequence.
FL= gb:AK059299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6427011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26570.1.S1_s_at--480--1011Chr01:37642354..37642378 (25 bp)
AGGTTGTTGGCCGTGGCCATCAAGC
LOC_Os01g64270
Os.26570.1.S1_s_at--369--3771Chr01:37642481..37642505 (25 bp)
CTCGGTTCGAGACGCTGCTCTTCCA
LOC_Os01g64270
Os.26570.1.S1_s_at--546--9291Chr01:37642638..37642753 (25 bp)
TCCCGGTGCCCCTGAGGGTGGACAA
LOC_Os01g64270
Os.26570.1.S1_s_at--4--1051Chr01:37642807..37642831 (25 bp)
AGGTGCTGGTCTACATCGACTGCCT
LOC_Os01g64270
Os.26570.1.S1_s_at--224--531Chr01:37642821..37642845 (25 bp)
ATCGACTGCCTGGTGTCGCCGGCGA
LOC_Os01g64270
Os.26570.1.S1_s_at--273--9471Chr01:37642854..37642878 (25 bp)
TCTGGGCCGGTATTCCGAGCGATCA
LOC_Os01g64270
Os.26570.1.S1_s_at--823--9271Chr01:37642867..37642891 (25 bp)
TCCGAGCGATCAGGAACGGTCCTAT
LOC_Os01g64270
Os.26570.1.S1_s_at--544--691Chr01:37642926..37642950 (25 bp)
ATGAGAAGCCTACTCGAGGCGCTCC
LOC_Os01g64270
Os.26570.1.S1_s_at--684--6211Chr01:37642941..37642965 (25 bp)
GAGGCGCTCCAAAAATGTATCCAGT
LOC_Os01g64270
Os.26570.1.S1_s_at--377--8771Chr01:37642956..37642980 (25 bp)
TGTATCCAGTATGCACAAGTTTGAG
LOC_Os01g64270
Os.26570.1.S1_s_at--1048--6211Chr01:37642990..37643014 (25 bp)
GAGGCGATGCAAGCCCATTATCTGA
LOC_Os01g64270
Target Sequence 
AGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGA
CGGCGTCAGCNTCGGCACGGTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGA
ACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGA
TTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGG
GCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTAC
TCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTNCAAGAGAGGCGATGCAAGCCCATTATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26570.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis