Browse Element(s) Details


Os.26642.1.S1_a_at

Description gb:AY495085.1
DB_XREF= gi:42416978
GEN=GDC
TID=Os.26642.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26642 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) glycine dehydrogenase P protein (GDC) mRNA, complete cds.
PROD=glycine dehydrogenase P protein
FL= gb:AY495085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5141011/11Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g4094011/11Glycine dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005961cellular_componentglycine dehydrogenase complex (decarboxylating)
GO:0004375molecular_functionglycine dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26642.1.S1_a_at--682--10132Chr01:29890517..29890541 (25 bp)
TATCCTTCGACCCATGGAGTCTATG
LOC_Os01g51410
Os.26642.1.S1_a_at--382--9952Chr01:29892164..29892188 (25 bp)
TACCCAGTTCTTTTCCGTGGAGTCA
LOC_Os01g51410
Os.26642.1.S1_a_at--595--6092Chr01:29892183..29892207 (25 bp)
GAGTCAATGGAACTGTTGCCCATGA
LOC_Os01g51410
Os.26642.1.S1_a_at--830--6152Chr01:29892225..29892331 (25 bp)
GAGGATTTAAGACGACTGCTGGTAT
LOC_Os01g51410
Os.26642.1.S1_a_at--152--5872Chr01:29892333..29892357 (25 bp)
GAGCCAGAGGATGTTGCAAAGCGTT
LOC_Os01g51410
Os.26642.1.S1_a_at--1063--2352Chr01:29892350..29892374 (25 bp)
AAAGCGTTTGATGGACTATGGATTC
LOC_Os01g51410
Os.26642.1.S1_a_at--212--10112Chr01:29892366..29892390 (25 bp)
TATGGATTCCATGCACCTACTATGT
LOC_Os01g51410
Os.26642.1.S1_a_at--583--1752Chr01:29892380..29892404 (25 bp)
ACCTACTATGTCATGGCCTGTTCCA
LOC_Os01g51410
Os.26642.1.S1_a_at--971--4472Chr01:29892395..29892419 (25 bp)
GCCTGTTCCAGGCACACTTATGATT
LOC_Os01g51410
Os.26642.1.S1_a_at--38--7912Chr01:29892545..29892569 (25 bp)
GGTTCTGTGATGCTCTAATCTCAAT
LOC_Os01g51410
Os.26642.1.S1_a_at--613--9612Chr01:29893154..29893178 (25 bp)
TCATCTGCACTCTGCAACAGGGATC
LOC_Os01g51410
Target Sequence 
TATCCTTCGACCCATGGAGTCTATGAAGAAGGCATTGATGAGATATGCAGGATAATTCATGAGAACGGTGGGCAGGTATA
CATGGATGGGGCTAACATGAATGCTCAGAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAGT
TCATCATTGATTTAAGAGGATTTAAGACGACTGCTGGTATAGAGCCAGAGGATGTTGCAAAGCGTTTGATGGACTATGGA
TTCCATGCACCTACTATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCCGAACT
AGACAGGTTCTGTGATGCTCTAATCTCAATCAGGGAGGAAATTGCAGAGATCGAAAGTGGCAAAGCAGATGTGAACAACA
ATGTCCTCAAGGTAAAATACCAGTATACTGCTATCTGTTTTCATATATTAGATTGTCGCGTGGACAATGTGTACGGGGAT
CGCAACCTCATCTGCACTCTGCAACAGGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26642.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis