Browse Element(s) Details


Os.26776.1.S1_at

Description gb:AK101342.1
DB_XREF= gi:32986551
TID=Os.26776.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034J23, full insert sequence.
FL= gb:AK101342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26776.1.S1_at--68--631Chr03:1430144..1430168 (25 bp)
ATGCTTCTTCCTGTGGGATACAAAG
LOC_Os03g03400
Os.26776.1.S1_at--143--10671Chr03:1430151..1430175 (25 bp)
TTCCTGTGGGATACAAAGGTTTCTT
LOC_Os03g03400
Os.26776.1.S1_at--463--7871Chr03:1430168..1430192 (25 bp)
GGTTTCTTAATCCTTGTCAAGTCAC
LOC_Os03g03400
Os.26776.1.S1_at--1001--3031Chr03:1430176..1430200 (25 bp)
AATCCTTGTCAAGTCACTACGTGTA
LOC_Os03g03400
Os.26776.1.S1_at--641--7091Chr03:1430188..1430212 (25 bp)
GTCACTACGTGTACTTTGAACTAGC
LOC_Os03g03400
Os.26776.1.S1_at--190--7451Chr03:1430196..1430220 (25 bp)
GTGTACTTTGAACTAGCTGTGTTAT
LOC_Os03g03400
Os.26776.1.S1_at--247--4731Chr03:1430211..1430235 (25 bp)
GCTGTGTTATTTTGAAGTGATATCG
LOC_Os03g03400
Os.26776.1.S1_at--682--5231Chr03:1430241..1430265 (25 bp)
GAATAGTTACATTCATTTTCTGGCA
LOC_Os03g03400
Os.26776.1.S1_at--1140--7931Chr03:1430273..1430297 (25 bp)
GGATAAAATCTGTTGTCACCCGCCA
LOC_Os03g03400
Os.26776.1.S1_at--1145--6611Chr03:1430284..1430308 (25 bp)
GTTGTCACCCGCCATGTAATGACTA
LOC_Os03g03400
Os.26776.1.S1_at--920--9671Chr03:1430288..1430312 (25 bp)
TCACCCGCCATGTAATGACTATAAT
LOC_Os03g03400
Target Sequence 
ATGCTTCTTCCTGTGGGATACAAAGGTTTCTTAATCCTTGTCAAGTCACTACGTGTACTTTGAACTAGCTGTGTTATTTT
GAAGTGATATCGTAATTGAATAGTTACATTCATTTTCTGGCAATACATGGGATAAAATCTGTTGTCACCCGCCATGTAAT
GACTATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis